PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294490.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 345aa MW: 38599.6 Da PI: 9.4203

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.1	4.2e-17	23	101	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e+++Liea++ ++er +++ + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ + XP_021294490.1 23 WTVNETMVLIEAKKMDDERRMKKSgdsegrskPTELRWKWVEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYQRRTA 101 ***********97777666532223333338899***********************************999853 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MHLVMADQGG NNIVMREYRK GNWTVNETMV LIEAKKMDDE RRMKKSGDSE GRSKPTELRW 60 KWVEDYCWRK GCMRSQNQCN DKWDNLMRDY KKVREYQRRT AEAGEGNNNN NEGSYWEMEK 120 NARKEKNLPS NMLRQIYEHL EEVVEKKGVQ RVVAAGGSGP NPNIPYVMDR PMTSVQPLLP 180 PLLQHQLPAA IPPAIALPLP ALPPLPPPTA APAPLVQPSP LPYAQPLPTV DSDTSEYSDS 240 PAKRRRRSGG NGEGTSGTAS ANNSNEVGTA ISKSASIIAE AIQASEEREE RRHRDLVSLH 300 ERRLKIEESR TEINRNGIDG LVVAINKLAN SILALASHKN QSAPK

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MHLVMADQGG NNIVMREYRK GNWTVNETMV LIEAKKMDDE RRMKKSGDSE GRSKPTELRW  60
KWVEDYCWRK GCMRSQNQCN DKWDNLMRDY KKVREYQRRT AEAGEGNNNN NEGSYWEMEK  120
NARKEKNLPS NMLRQIYEHL EEVVEKKGVQ RVVAAGGSGP NPNIPYVMDR PMTSVQPLLP  180
PLLQHQLPAA IPPAIALPLP ALPPLPPPTA APAPLVQPSP LPYAQPLPTV DSDTSEYSDS  240
PAKRRRRSGG NGEGTSGTAS ANNSNEVGTA ISKSASIIAE AIQASEEREE RRHRDLVSLH  300
ERRLKIEESR TEINRNGIDG LVVAINKLAN SILALASHKN QSAPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-71	Trihelix family protein