PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294458.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 401aa MW: 43949.8 Da PI: 9.4909

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.5	1e-14	85	172	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + ++ ++++pk qCk++++ ++k+yk +k+ ++ + s++++f++l+ XP_021294458.1 85 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVsGREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKIAGG--GGPSKWVFFEKLD 172 7***********************************856666666543339**************9997..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MEEDEEIQSH PSAGAAGSPS PSSPSRPSNG RITVTVAAAP PSEASSPQEP HQQENALALA 60 LLPPQQQPSQ PKNNGGGGGG GREDCWSEGA TAVLIDAWGE RYLELSRGNL KQKHWKEVAD 120 IVSGREDYTK TPKTDIQCKN RIDTVKKKYK LEKAKIAGGG GPSKWVFFEK LDQLIGPTAK 180 IAVHASAASG GSGGSTGLLS KVPMGIPVGI RSSLNPFRNS QLQERQQQQQ QQQKQPRMVV 240 QKNQNKMQLR KRGPVDSDSE EEEEEEEEEE ADSLDSLPPP PTGKRARRMV HKGVNSGGKG 300 RKWGNSVREL TQAILRFGEA YEQAESAKLQ QVVEMEKQRM KFAKELELQR MQFFMKTQLE 360 ISQLKHGRKA GGIGNSSNHH SNINNNNNNN NSNNNHSDSS N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MEEDEEIQSH PSAGAAGSPS PSSPSRPSNG RITVTVAAAP PSEASSPQEP HQQENALALA  60
LLPPQQQPSQ PKNNGGGGGG GREDCWSEGA TAVLIDAWGE RYLELSRGNL KQKHWKEVAD  120
IVSGREDYTK TPKTDIQCKN RIDTVKKKYK LEKAKIAGGG GPSKWVFFEK LDQLIGPTAK  180
IAVHASAASG GSGGSTGLLS KVPMGIPVGI RSSLNPFRNS QLQERQQQQQ QQQKQPRMVV  240
QKNQNKMQLR KRGPVDSDSE EEEEEEEEEE ADSLDSLPPP PTGKRARRMV HKGVNSGGKG  300
RKWGNSVREL TQAILRFGEA YEQAESAKLQ QVVEMEKQRM KFAKELELQR MQFFMKTQLE  360
ISQLKHGRKA GGIGNSSNHH SNINNNNNNN NSNNNHSDSS N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	6e-76	Trihelix family protein