PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294179.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 275aa    MW: 30227.3 Da    PI: 9.8964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +        ++R+  ++k++w+++
   XP_021294179.1  5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPDfapylTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPDFAPY LTHRSNIDLK DKWRNLSVST  60
SAQGSRDKSR APKVKAIVAS LPNTPSSAPA ASRAHIVTTD AVVGDASNSS LDGKNAPRYN  120
TMIFEALSTI KDANGSDISA IVSYIEQRHE VPPNFRRLLS SRLRRLVSQG KLEKIQNCYK  180
IRKDALMGTK TPTPKQKDIR LRQNSGVVSS GETMEEAAIT AAYKVAEAEN KSFLASEAVK  240
EAERVSKMAE DTDSMLQLVK EIYEQCSRGE IVLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-85MYB_related family protein