PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294112.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 691aa MW: 80298 Da PI: 5.6893

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.4	1.8e-21	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_021294112.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVRKKPTGEHHRDRKSVRCGCDAKMYLSKEVidgVSQWFVVQFSNVHNHELL 159 59******************8888.***************************************99867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNESVQSEA MVAPYVGMVF 60 KSDEDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVR KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN 240 DTMELLEACK ATKEADQDFV YDYTVDENDK VENIAWSYGD SVNSYTTYGD VVYFDTTYRS 300 ITYDMLFGAW IGIDNNGRPI FFGCVLLQDE TMRSFAWALQ TFIGFMKGRC PQTISTDLDP 360 GLRDAIRSEL PSTKQVMSIW NIMPKVSSWF PLQLGSQYAE FKSEFDALYR LESTEDFELR 420 WNQMVSIFGL GSDKHITLLY SLRTSWAQSY VRGYFLARMV TTAYSKSVDA FLKGIFSAQT 480 SLRRFFEQVG IAANIQNQPH QEMQHMLLKT CLPIEQHSRQ ILTPFAFNAL QHELIVSMQY 540 AASEMANGSY LVRHFRKIDG ESLVIWIPED EQIHCSCKEF ESSGILCRHA LRVFIDKNYF 600 QLPDKYFLSR WRRESSLMFY DDHSVPDNDD EWFQEFQSLT ETLFTESSIT KERSDYMRRE 660 LTKELTRLLN EVRDMPESDA APMDFTLSPA G

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNESVQSEA MVAPYVGMVF  60
KSDEDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVR KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN  240
DTMELLEACK ATKEADQDFV YDYTVDENDK VENIAWSYGD SVNSYTTYGD VVYFDTTYRS  300
ITYDMLFGAW IGIDNNGRPI FFGCVLLQDE TMRSFAWALQ TFIGFMKGRC PQTISTDLDP  360
GLRDAIRSEL PSTKQVMSIW NIMPKVSSWF PLQLGSQYAE FKSEFDALYR LESTEDFELR  420
WNQMVSIFGL GSDKHITLLY SLRTSWAQSY VRGYFLARMV TTAYSKSVDA FLKGIFSAQT  480
SLRRFFEQVG IAANIQNQPH QEMQHMLLKT CLPIEQHSRQ ILTPFAFNAL QHELIVSMQY  540
AASEMANGSY LVRHFRKIDG ESLVIWIPED EQIHCSCKEF ESSGILCRHA LRVFIDKNYF  600
QLPDKYFLSR WRRESSLMFY DDHSVPDNDD EWFQEFQSLT ETLFTESSIT KERSDYMRRE  660
LTKELTRLLN EVRDMPESDA APMDFTLSPA G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein