PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293968.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 411aa MW: 45319.2 Da PI: 9.7928

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	169	192	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++Cg+ F+ + + H + H XP_021293968.1 169 FVCHKCGEKFKKLEAIEAHHLSrH 192 89*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MPAPWFSFKR LGKCNAELSD TQDPKASGRK TRKPCSCSYG CSRSIFYLRD VIHGSKRHTD 60 KAPIGSPRSI GSSDILNPIT HQVVFTDSKC ELKITRCSAN GGGRGGSTFV GTLRPGTPGP 120 GDRILEPVYS CRRSFSLSRT TLGGPSIFGS SNDICSKPRR SLDAGSQGFV CHKCGEKFKK 180 LEAIEAHHLS RHAVTALSEG DSSKKIVELI CQTSFLESET KFGPIERILK VHNMQRSLAQ 240 FEDYREMVKI KASKLSKKHA RCLADGNELL RFYGTTVACS IGMKNTSSLC TLEKCGICQI 300 LRHGFSTMKK FNGFRSVFTS SSGKRALECI EPDEENRCLR KALVVCRVIA GRVHKPLEKV 360 QEMASQSSFD SLAGNFDSHP NIEELYSLNP RALFPCFVVI CKPSKQSAQK L

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MPAPWFSFKR LGKCNAELSD TQDPKASGRK TRKPCSCSYG CSRSIFYLRD VIHGSKRHTD  60
KAPIGSPRSI GSSDILNPIT HQVVFTDSKC ELKITRCSAN GGGRGGSTFV GTLRPGTPGP  120
GDRILEPVYS CRRSFSLSRT TLGGPSIFGS SNDICSKPRR SLDAGSQGFV CHKCGEKFKK  180
LEAIEAHHLS RHAVTALSEG DSSKKIVELI CQTSFLESET KFGPIERILK VHNMQRSLAQ  240
FEDYREMVKI KASKLSKKHA RCLADGNELL RFYGTTVACS IGMKNTSSLC TLEKCGICQI  300
LRHGFSTMKK FNGFRSVFTS SSGKRALECI EPDEENRCLR KALVVCRVIA GRVHKPLEKV  360
QEMASQSSFD SLAGNFDSHP NIEELYSLNP RALFPCFVVI CKPSKQSAQK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-138	C2H2 family protein