PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293552.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 302aa    MW: 32763.7 Da    PI: 10.1363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-1488132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_021293552.1  88 PWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 132
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MSRSCSQCGN NGHNSRTCGE VAGGGGGGEN GIMLFGVRVT EGSFRKSVSM NNLSQFDQPQ  60
DSNADAGYAS DDVVHASGRS RERKRGVPWT EEEHRLFLLG LQKVGKGDWR GISRNFVKTR  120
TPTQVASHAQ KYFLRRNNQN RRRRRSSLFD ITTDSFMNST ILEEDQVHQE NVSLRLPLPQ  180
AQAQAQAQMS RFPMSTFPVT LSPVVLPVAG ENNSMENLTL GTSPKANTSP KLVRPIPILP  240
VPPSSKMADL NLNQKIPVDP LPLSLKLSTP SADEQSTAAA AAHSSTFQAM SSGDSNSIIS  300
VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-79MYB_related family protein