PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293436.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 421aa MW: 46871.8 Da PI: 8.2197

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_021293436.1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16.2	3.1e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_021293436.1 134 WVCEKCSKGYAVQSDYKAHLKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MLDNTTTSAL PSSSSDPLTP LENGATQKRK RKPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET QEVKKRVFVC PEPSCLHHDP CHALGDLVGI 120 KKHFRRKHSN QKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 ACTVRRVQPE LQALQPACSS RTASSTSPSS DANFIIGPLP GLPLPKSTEP VFLYSHASTS 240 DHQHQLQHNL ELQLLPSSST HSSRNSDENY ATHLKLSIGS SDCCEKSEAN KLSLDTCREK 300 SASETALEAT RLKEFASEQL KLAMTEKAYA EKARQEAKRQ IEMAELEFAS AKRIRQQAQG 360 ELEKAQVLKD QATKKISTTI MQITCQACKH QFQTSTAAVP ADETSLAMSY MSSATTEGEG 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MLDNTTTSAL PSSSSDPLTP LENGATQKRK RKPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET QEVKKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN QKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACTVRRVQPE LQALQPACSS RTASSTSPSS DANFIIGPLP GLPLPKSTEP VFLYSHASTS  240
DHQHQLQHNL ELQLLPSSST HSSRNSDENY ATHLKLSIGS SDCCEKSEAN KLSLDTCREK  300
SASETALEAT RLKEFASEQL KLAMTEKAYA EKARQEAKRQ IEMAELEFAS AKRIRQQAQG  360
ELEKAQVLKD QATKKISTTI MQITCQACKH QFQTSTAAVP ADETSLAMSY MSSATTEGEG  420
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-148	C2H2 family protein