PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293127.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 671aa    MW: 74524.6 Da    PI: 5.7276
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.71.6e-1292896561374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv+lL++c+ea+ s++ +++++++a+l +lasp+g+++ Rl+ay++eALa r++r +++++++ +p+e + +  +++ +al+l+++vsPi+kf h
  XP_021293127.1 289 LVQLLTACVEAIGSKNIAAINHFIAKLGDLASPRGSAISRLTAYYAEALALRVTRLWPHIFHITTPRELD-RVDDDTGTALRLLNQVSPIPKFVH 382
                     689***************************************************************9998.5677888999************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++R+Tg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++
  XP_021293127.1 383 FTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRVTGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLEDVR 472
                     ******************************************************....***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     l++L+vk++E++aVn+v+qlh++l +    +   +++L l++s++P vvv++eqea+hn  s+ +r++++l+yysa+fds++++l+ es  r+k+
  XP_021293127.1 473 LWMLHVKEKESVAVNCVFQLHKTLYDGNGGA--LRDFLGLLRSTNPAVVVMAEQEAEHNVLSLDARVTNSLRYYSAIFDSMDSSLSLESPIRNKI 565
                     ************************6554444..589*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374
                     E++ ++rei+n++aceg++r+erhe++ekWr+ +e+ GF+ + +se++  q ++ll++++ + y+v+++     +l+l W d+pL+svSaW+
  XP_021293127.1 566 EEM-FAREIRNIIACEGSDRFERHESFEKWRKLMEQGGFRCMGVSERELLQSQMLLKMYSCENYSVKKQgqdGVALTLSWLDQPLYSVSAWT 656
                     ***.********************************************************999****6644244566**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE ASAQFQACHF QTSMSTQRLD LPCSFSRKDT SRSQPIRPVG  60
LSVEKPIESK TTGCSLKQNI RLPPLTTSSQ NPFEGRREIK DEFWEKGKSL KRFAEQGLVD  120
ESVINRAKRK KGSSDNEDSG DFHEGGGDNL SLGQLGAGNF WFQPSFTGQN APQVPFSLTC  180
SGDEERVCFV PGEVISPPLP LSNNPWIESV ITEITDVGEK DVETIHRPAN ETSGSSTSSE  240
SHSLGLRLNE QATEQEVGNG SGNPYPHDGA RLGANEEENN HGEHQGFELV QLLTACVEAI  300
GSKNIAAINH FIAKLGDLAS PRGSAISRLT AYYAEALALR VTRLWPHIFH ITTPRELDRV  360
DDDTGTALRL LNQVSPIPKF VHFTSNEILL RAFEGKDRVH IIDFDIKQGL QWPSLFQSLA  420
SRTNPPSHVR VTGIGESKQE LNETGDRLAG FAEALNLPFE FHPVVDRLED VRLWMLHVKE  480
KESVAVNCVF QLHKTLYDGN GGALRDFLGL LRSTNPAVVV MAEQEAEHNV LSLDARVTNS  540
LRYYSAIFDS MDSSLSLESP IRNKIEEMFA REIRNIIACE GSDRFERHES FEKWRKLMEQ  600
GGFRCMGVSE RELLQSQMLL KMYSCENYSV KKQGQDGVAL TLSWLDQPLY SVSAWTPVDV  660
AGSSSSFSQP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein