PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292344.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WOX

Protein Properties

Length: 357aa MW: 40597.3 Da PI: 7.6293

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	74	133	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+p+a+++++++++l +++ ++V++WFqN++a+e++ XP_021292344.1 74 SRWNPTPEQLRTLEELYRRgTRTPTADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 133 7***************99************************************97 PP
2	Wus_type_Homeobox	115.8	2.1e-37	73	135	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_021292344.1 73 SSRWNPTPEQLRTLEELYRRGTRTPTADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 135 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MWMMGYNDSA EFNMPDSFNG RKLRPLIPRP IPSANNPPCL SRINGTDFFA LNHHLTMGDQ 60 NKRDFNTQPV VVSSRWNPTP EQLRTLEELY RRGTRTPTAD QIQHITAQLR RYGKIEGKNV 120 FYWFQNHKAR ERQKRRRQME SAPDEHSRVD TDIFERKDSG ANKTGYEVEQ TKTWTVPTNC 180 STLAEDSVSI QTAAKAAVAE CRADGWIQFD EGELQHRRNF VERNGAWQKM HLSHSCPPSS 240 HHLINNSSAA AATNTATPIA PIPTEIRRMD PKQLNKTHDL SIFISPCREN GNVLDHLNNA 300 CRNEEDGPGE SQTLQLFPLR SGDGIDNVKE KENEISAAAV TASLTPYPFF EFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MWMMGYNDSA EFNMPDSFNG RKLRPLIPRP IPSANNPPCL SRINGTDFFA LNHHLTMGDQ  60
NKRDFNTQPV VVSSRWNPTP EQLRTLEELY RRGTRTPTAD QIQHITAQLR RYGKIEGKNV  120
FYWFQNHKAR ERQKRRRQME SAPDEHSRVD TDIFERKDSG ANKTGYEVEQ TKTWTVPTNC  180
STLAEDSVSI QTAAKAAVAE CRADGWIQFD EGELQHRRNF VERNGAWQKM HLSHSCPPSS  240
HHLINNSSAA AATNTATPIA PIPTEIRRMD PKQLNKTHDL SIFISPCREN GNVLDHLNNA  300
CRNEEDGPGE SQTLQLFPLR SGDGIDNVKE KENEISAAAV TASLTPYPFF EFLPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	2e-56	WOX family protein