PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292272.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 381aa MW: 43414.3 Da PI: 8.5871

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292272.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.2	6.1e-38	123	269	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssasnsssg...... 88 k+drhski T++g+RdRR+Rls+e+a++fF Lqd+LG+dk+s t+eWLl qa +ik+l++++ s+ ++c + +s +s s+g XP_021292272.1 123 SKRDRHSKINTAKGPRDRRMRLSLEVAREFFGLQDMLGYDKASRTVEWLLIQARSEIKKLARSKLSQMnNSCtvA--AAKSPSS-TSEGevvsgi 214 69***********************************************************444431444331..2222222.2222345566 PP TCP 89 ..........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 k+++s++++k +q ++ +++ la++ r+karara+ rt+ k + XP_021292272.1 215 dkaavegsisKEKPSTKEKKVRQPRKITFRPLARDLREKARARAKARTKAKSMWA 269 6666778886444444455555555555799999*************998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MFPSNSNRYN DSIAYIDHSI LHRHFSNDII SFSKQEDLPL SFFHAPSPCY NHCELELEED 60 YGDFLQQHHD LLLHQQTLTT DNSVSDTIII MPDHSSKNEG STINCTRKSH NATEQQIERK 120 RSSKRDRHSK INTAKGPRDR RMRLSLEVAR EFFGLQDMLG YDKASRTVEW LLIQARSEIK 180 KLARSKLSQM NNSCTVAAAK SPSSTSEGEV VSGIDKAAVE GSISKEKPST KEKKVRQPRK 240 ITFRPLARDL REKARARAKA RTKAKSMWAQ RFDESKLCDD TRNDDLNKFS AWSSVETGEE 300 SGSQHHSRNP SFQAAVAEVK ELSSHDRERI RIHGDMGDES LAIFHNSIFN CLQNAGINQE 360 HQLTSFLSFG KSWDGYNNQS L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MFPSNSNRYN DSIAYIDHSI LHRHFSNDII SFSKQEDLPL SFFHAPSPCY NHCELELEED  60
YGDFLQQHHD LLLHQQTLTT DNSVSDTIII MPDHSSKNEG STINCTRKSH NATEQQIERK  120
RSSKRDRHSK INTAKGPRDR RMRLSLEVAR EFFGLQDMLG YDKASRTVEW LLIQARSEIK  180
KLARSKLSQM NNSCTVAAAK SPSSTSEGEV VSGIDKAAVE GSISKEKPST KEKKVRQPRK  240
ITFRPLARDL REKARARAKA RTKAKSMWAQ RFDESKLCDD TRNDDLNKFS AWSSVETGEE  300
SGSQHHSRNP SFQAAVAEVK ELSSHDRERI RIHGDMGDES LAIFHNSIFN CLQNAGINQE  360
HQLTSFLSFG KSWDGYNNQS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	1e-21	TCP family protein