PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292038.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

E2F/DP

Protein Properties

Length: 361aa MW: 40330.2 Da PI: 9.7299

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.7	4.7e-24	21	86	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+++++ + + l+e+a +L v +rRRiYDi+NVLe+++l+++k+kn+++wkg XP_021292038.1 21 RKQKSLGLLCSSFLSLYNREDVELIGLDEAAAKL---GV--ERRRIYDIVNVLESVGLLTRKAKNKYTWKG 86 79***************999********.....****************************98 PP
2	E2F_TDP	76.3	2.9e-24	159	239	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+lltq+f+kl+ +s+++ ++l+e+a+ L+ + +++k+RR+YDi+NVL++++liek ++k+++rw g XP_021292038.1 159 RREKSLGLLTQNFVKLFVCSNAELISLDEAARLLLGNahntsIMRTKVRRLYDIANVLSSMDLIEKthtvdTRKPAFRWLG 239 689*****************************9999999**********************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MPVSSSSSLP ESSSRHYTYS RKQKSLGLLC SSFLSLYNRE DVELIGLDEA AAKLGVERRR 60 IYDIVNVLES VGLLTRKAKN KYTWKGFAAI PKALQDLKEE GFSSNFKNLD ANSNAKVSDD 120 DDDDEDDEGF SNPNTGSQTE TSKPTSVLKS SASSKIDNRR EKSLGLLTQN FVKLFVCSNA 180 ELISLDEAAR LLLGNAHNTS IMRTKVRRLY DIANVLSSMD LIEKTHTVDT RKPAFRWLGL 240 SGKSDKGSAD ALVLHQSRKR AFGTDVTNII SKRNKVDSSN DGNAKQCMKM QKQIKVENLV 300 TVEDRRSWED SKQGSKSYQF GPFAPVNLSR SGNSENNVKR VHDWESLAST YRPQYHNQGK 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MPVSSSSSLP ESSSRHYTYS RKQKSLGLLC SSFLSLYNRE DVELIGLDEA AAKLGVERRR  60
IYDIVNVLES VGLLTRKAKN KYTWKGFAAI PKALQDLKEE GFSSNFKNLD ANSNAKVSDD  120
DDDDEDDEGF SNPNTGSQTE TSKPTSVLKS SASSKIDNRR EKSLGLLTQN FVKLFVCSNA  180
ELISLDEAAR LLLGNAHNTS IMRTKVRRLY DIANVLSSMD LIEKTHTVDT RKPAFRWLGL  240
SGKSDKGSAD ALVLHQSRKR AFGTDVTNII SKRNKVDSSN DGNAKQCMKM QKQIKVENLV  300
TVEDRRSWED SKQGSKSYQF GPFAPVNLSR SGNSENNVKR VHDWESLAST YRPQYHNQGK  360
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	1e-124	E2F/DP family protein