PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291922.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1183aa MW: 131876 Da PI: 9.271

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.6e-10	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk++a + +R+ +++ XP_021291922.1 47 QWTKEELERFYEAYRKYGKD-WKKVATVVR-NRSVEMV 82 6***************99.*****.98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1183 aa Download sequence
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV ATVVRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD 120 SEQESNEGVG ASRKPQKRSR GKLRDQPSKS LDKSFPDLLQ FQSAASSYGC LSLLKRRRSE 180 SRPRAVGKRT PRVPISFSHD KNRGERYFSP IRQGMKLKVD TVDDDVAHEI ALVLTEASQR 240 GGSPQVSRTP NRKAEASSPI LNSERMNAES ETTSAKIHGS EMDEDACELS LGSTEADNAD 300 YARGKNYSMN IEGTGTIEVQ QKGKRYYRRK PGVEESVNNH LEDTKEACSG TEEDQKLCDF 360 KGKFEAEVAD TKTSRGSIKG PRKRSKKVLF GGVEDTSFDA LQTLADLSLM MPETAADTES 420 SVQFKEEKNE VVEKTKLKGN HPVSGAKGSA PKTCKQGKVF GHDVRAIPEA KEETHPGNVG 480 MRKRRQKSSP YKLQIPKDET DADSHLGESR NIEASDEVKN LPSKCKRSNN VAHSKQGKSV 540 RPPEHRSSST DHGRDLNNSA PSTIQVSPVN RVNLPTKVRS KRKIDAQKPV IGKDIKSSDS 600 IVKGKFSVPV SLFQDRALNL KEKLCNFLCP YQARRWCTFE WFYSTIDYPW FAKREFVEYL 660 DHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLKEEREK LHQYRESVRM HYAELRAGIG 720 EGLPTDLARP LSVGQRVIAI HPKTRQIHDG NVLIVDRSRY RIQFDSTELG VESVMDIDCM 780 PLNPLENLPA SLVRQNAAVN KFFENFHELK MNGQPKESKM EENIKFAPCE ENANSPSRTS 840 PSTFNVGNIS QPVKVDPSSP NLQLKVGPME TVYTQQAVNS QPSALALIQA READVEALSQ 900 LTRALDKKHL QEAVVSELRR MNDEVLENQK GGDNSIKDSD SFKKQYAAVL LQLNEVNEQV 960 SSALFCLRQR NTYQGTSSVR LLKPLAKIGE HGCQLSSFDH SMHHAQESVS HVAEIVESSR 1020 TKARSMVDAA MQAMSSLRKG GKSIERIEDA IDFVNNQLSV DDLSVPSLRS SIPIDSARST 1080 VTFHDHLTAS VSNPLATGHA PDTKLSDQDD LRIPSDLIAH CVATLLMIQK CTERQFPPGD 1140 VAQVLDSAVT SLKPCCSQNL SIYAEIQKCM GIIRNQILAL VPT

Sequence ? help Back to Top

Protein Sequence Length: 1183 aa Download sequence

MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATVVRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD  120
SEQESNEGVG ASRKPQKRSR GKLRDQPSKS LDKSFPDLLQ FQSAASSYGC LSLLKRRRSE  180
SRPRAVGKRT PRVPISFSHD KNRGERYFSP IRQGMKLKVD TVDDDVAHEI ALVLTEASQR  240
GGSPQVSRTP NRKAEASSPI LNSERMNAES ETTSAKIHGS EMDEDACELS LGSTEADNAD  300
YARGKNYSMN IEGTGTIEVQ QKGKRYYRRK PGVEESVNNH LEDTKEACSG TEEDQKLCDF  360
KGKFEAEVAD TKTSRGSIKG PRKRSKKVLF GGVEDTSFDA LQTLADLSLM MPETAADTES  420
SVQFKEEKNE VVEKTKLKGN HPVSGAKGSA PKTCKQGKVF GHDVRAIPEA KEETHPGNVG  480
MRKRRQKSSP YKLQIPKDET DADSHLGESR NIEASDEVKN LPSKCKRSNN VAHSKQGKSV  540
RPPEHRSSST DHGRDLNNSA PSTIQVSPVN RVNLPTKVRS KRKIDAQKPV IGKDIKSSDS  600
IVKGKFSVPV SLFQDRALNL KEKLCNFLCP YQARRWCTFE WFYSTIDYPW FAKREFVEYL  660
DHVGLGHVPR LTRVEWGVIR SSLGKPRRFS EQFLKEEREK LHQYRESVRM HYAELRAGIG  720
EGLPTDLARP LSVGQRVIAI HPKTRQIHDG NVLIVDRSRY RIQFDSTELG VESVMDIDCM  780
PLNPLENLPA SLVRQNAAVN KFFENFHELK MNGQPKESKM EENIKFAPCE ENANSPSRTS  840
PSTFNVGNIS QPVKVDPSSP NLQLKVGPME TVYTQQAVNS QPSALALIQA READVEALSQ  900
LTRALDKKHL QEAVVSELRR MNDEVLENQK GGDNSIKDSD SFKKQYAAVL LQLNEVNEQV  960
SSALFCLRQR NTYQGTSSVR LLKPLAKIGE HGCQLSSFDH SMHHAQESVS HVAEIVESSR  1020
TKARSMVDAA MQAMSSLRKG GKSIERIEDA IDFVNNQLSV DDLSVPSLRS SIPIDSARST  1080
VTFHDHLTAS VSNPLATGHA PDTKLSDQDD LRIPSDLIAH CVATLLMIQK CTERQFPPGD  1140
VAQVLDSAVT SLKPCCSQNL SIYAEIQKCM GIIRNQILAL VPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	481	486	MRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein