PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291818.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 692aa MW: 79914.7 Da PI: 6.585

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.6e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel XP_021291818.1 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvegVTQWYVSQFSNVHNHELL 162 69******************8888.**************************************998767789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MTMKPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSASAS SEAVFTPYVG 60 QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVEGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTLELLE ACKAMTVRDA NFVYDYTTDE NNKVENIAWS YGDSVHAYTV FGDVITFDTT 300 YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFTW ALQTFLRFMR GRHPQTILTD 360 LDSSLRDAIA RELPNTKHVI CLWHVLSKLS SWFSLPLGSQ YVEFKAEFDA LCHSVGIEEF 420 EHQWNLLVAR FGLASDKHIA LLFSYRTSWP VSYIRGYFLA RSMTADFSQS LDAFLKRILS 480 GQTCLQSFFE QVGIAADLRN QSREGMQYMH IKTCLPIEEN ARSILTPYAF NALQHEIVLS 540 MQYATTDMGN GSYLVQHYKK MDGEYLVIWI PQEEQIHCSC KEFEHSGILC RHCLRVLIVK 600 NYFEIPEKYV LFRWRLESSL VPAEDQNAQC SSDECVQAFH SLAATLLTES LFTKERFNHV 660 HRELTRLLDY VRDMPVCNEF ALNMAANNVS ES

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MTMKPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSASAS SEAVFTPYVG  60
QIFKSDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVEGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK  240
RENDTLELLE ACKAMTVRDA NFVYDYTTDE NNKVENIAWS YGDSVHAYTV FGDVITFDTT  300
YRSITYGLLL GVWFGIDNHG KPIFFGCVLL QDESSNSFTW ALQTFLRFMR GRHPQTILTD  360
LDSSLRDAIA RELPNTKHVI CLWHVLSKLS SWFSLPLGSQ YVEFKAEFDA LCHSVGIEEF  420
EHQWNLLVAR FGLASDKHIA LLFSYRTSWP VSYIRGYFLA RSMTADFSQS LDAFLKRILS  480
GQTCLQSFFE QVGIAADLRN QSREGMQYMH IKTCLPIEEN ARSILTPYAF NALQHEIVLS  540
MQYATTDMGN GSYLVQHYKK MDGEYLVIWI PQEEQIHCSC KEFEHSGILC RHCLRVLIVK  600
NYFEIPEKYV LFRWRLESSL VPAEDQNAQC SSDECVQAFH SLAATLLTES LFTKERFNHV  660
HRELTRLLDY VRDMPVCNEF ALNMAANNVS ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein