PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291719.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 311aa    MW: 34268.6 Da    PI: 9.0596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-1257101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_021291719.1  57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 101
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MVSKNPNPVE GFYLDPTGMA LPGLGPFTTT ATAASTASSS EDPNKKIRKP YTITKSRESW  60
TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHLPPPRPK  120
RKAAHPYPQK ASKNAQPHQQ VSGSFQSSAA LLDTVCVLRT DPSSMLMNPN TSAAASSWTN  180
NAQTINFSQA KKGPGLANNS CSSTESTPKT RQIGEMTDQG NHVLPDFAQV YSFIGSIFDP  240
NVSGHLQKLK KMDPIDVETV LLLMRNLSIN LTSPDFEDHR RLLSSYEIET EAIDHGGVCK  300
AVHNDQSKSI T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-115MYB_related family protein