PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021291567.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17816.9 Da    PI: 10.1063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021291567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF442.9e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ t+ kR++g+lKK +EL +LC++ ++ iifs 
  XP_021291567.1 11 IPNESVRKATLKKRKAGLLKKLSELATLCGVTACAIIFSG 50
                    889***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MGRKKVKHEL IPNESVRKAT LKKRKAGLLK KLSELATLCG VTACAIIFSG YNTQPDVWPS  60
PIDAFRVLDK FNNLPADKQG KYMMDQKVLL RRIMLQLNEK LEKQREKNRE LEVELALAET  120
NYDFNSLQSS EELVHLLKDK IEFVMNKIES KGLKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKHELIPNESVRKATLKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.23e-25M-type_MADS family protein