PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290198.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 578aa MW: 62424.5 Da PI: 6.7804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	388	435	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_021290198.1 388 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 435 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MEKDKVFMAE GLNRTGAPPT WNSCSFGMDM QTNELNCSTE QVGSCFFNPN WDNSMDQSDP 60 FESALSSMVS SPAASNAGST LPGSGDNVMI RELIGRLGNI CNSGDISPQS FVKPNNNTNS 120 GNTSCYSTPL NSPPKLNLSV VDSQIRGNLN LPGLGNQLPI HPSLAPFSPD PGFAERAARF 180 SCFSTTSRNF GGLNGQLGLT ETELPQRLRP RMDSVKLSRV SSNQSIKVTG SQVNVTESNK 240 NSPQEGSSGS DKKNTRLSRS SSPENAEFGD SKEESSVSEQ IPGGDTSIKV QNDANARKRK 300 SVPRGKAKEI PSPAAADAKV APENGESTTK RSKQEEAAGN AKEKTEQNGN GKAANDGNQN 360 QSKENSKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK 420 AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDINMEALL SKDMFQSCGS LPHALYSMDS 480 SAPAFPFGYQ AQQQALPLHS GISNNIETQF SMNPLTAVLR KTHGLQLPPI DGLIDANPQV 540 ASFWEDDLQS IVQMGFGQNQ AQGYQGSMAA AGQVKIEL

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MEKDKVFMAE GLNRTGAPPT WNSCSFGMDM QTNELNCSTE QVGSCFFNPN WDNSMDQSDP  60
FESALSSMVS SPAASNAGST LPGSGDNVMI RELIGRLGNI CNSGDISPQS FVKPNNNTNS  120
GNTSCYSTPL NSPPKLNLSV VDSQIRGNLN LPGLGNQLPI HPSLAPFSPD PGFAERAARF  180
SCFSTTSRNF GGLNGQLGLT ETELPQRLRP RMDSVKLSRV SSNQSIKVTG SQVNVTESNK  240
NSPQEGSSGS DKKNTRLSRS SSPENAEFGD SKEESSVSEQ IPGGDTSIKV QNDANARKRK  300
SVPRGKAKEI PSPAAADAKV APENGESTTK RSKQEEAAGN AKEKTEQNGN GKAANDGNQN  360
QSKENSKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK  420
AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDINMEALL SKDMFQSCGS LPHALYSMDS  480
SAPAFPFGYQ AQQQALPLHS GISNNIETQF SMNPLTAVLR KTHGLQLPPI DGLIDANPQV  540
ASFWEDDLQS IVQMGFGQNQ AQGYQGSMAA AGQVKIEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-92	bHLH family protein