PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290088.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 488aa MW: 55189.9 Da PI: 5.4033

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.2	3.5e-35	19	109	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d+++++++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++ XP_021290088.1 19 FLLKTYDMVDDSSTDDIVSWSSNKKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLLKN 104 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_021290088.1 105 IHRRK 109 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MDPSAPSASG GGGGGPAPFL LKTYDMVDDS STDDIVSWSS NKKSFVVWNP PEFARLLLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEDFVKDQKH LLKNIHRRKP IHSHSHPQGS 120 LIDPERAGFE EEIEKLSREK AALEANVLRF RQERSAAKHQ LEELAQRADQ MERRQDTLFN 180 FLQKAAQDPI FVEHLVRKIE SMDVTAYNKK RRLPQVDQIK PVAENCLVDN NSSSRSEFGN 240 IFHQDFSNKL RLELSPAVSD INLVSHSTQS SNEDGASPQR RISEGEPKDA QTRPEGLLFT 300 PETLDLSDTG TSFTFKMDSS FTQRVPMNES PPVHSLQQRL NSNEEPDSHI SCQLNLTLAS 360 SSLQVNRSPS LTRMSQQGQE TGKGPESRSN ANTKDSDTRG FENNRNMADE EAALPSPIEA 420 PNIHQEPAAP PVRVNDIFWE QFLTERPGSS DNEEASSSYR ANPYEEQEDK RSGYGLLRNA 480 KNMEQLSL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MDPSAPSASG GGGGGPAPFL LKTYDMVDDS STDDIVSWSS NKKSFVVWNP PEFARLLLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEDFVKDQKH LLKNIHRRKP IHSHSHPQGS  120
LIDPERAGFE EEIEKLSREK AALEANVLRF RQERSAAKHQ LEELAQRADQ MERRQDTLFN  180
FLQKAAQDPI FVEHLVRKIE SMDVTAYNKK RRLPQVDQIK PVAENCLVDN NSSSRSEFGN  240
IFHQDFSNKL RLELSPAVSD INLVSHSTQS SNEDGASPQR RISEGEPKDA QTRPEGLLFT  300
PETLDLSDTG TSFTFKMDSS FTQRVPMNES PPVHSLQQRL NSNEEPDSHI SCQLNLTLAS  360
SSLQVNRSPS LTRMSQQGQE TGKGPESRSN ANTKDSDTRG FENNRNMADE EAALPSPIEA  420
PNIHQEPAAP PVRVNDIFWE QFLTERPGSS DNEEASSSYR ANPYEEQEDK RSGYGLLRNA  480
KNMEQLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein