PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289353.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NF-YA
Protein Properties Length: 328aa    MW: 35858.6 Da    PI: 9.9643
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.12e-30160216158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq+Rak+  e+k+ +k+rkpy+h SRh hA+rRpRg+gGrF
  XP_021289353.1 160 DGPIYVNAKQYNGIIRRRQSRAKAVLENKV-TKARKPYMHYSRHLHAMRRPRGCGGRF 216
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MAMQTLYLKE HDGIVHNPMG QLASVPTLPW WSALGSQSVY GESCGQSKTL LMEHPSSGDQ  60
LTSTKQAGRA TEQQLNKANP TQFTIFPGDF KNSGDGHKPQ AVISLQSAPS EHHARFELGF  120
RQPMVCAKYP YVDQCYGVFS TYGPQISGRV MLPLNMATED GPIYVNAKQY NGIIRRRQSR  180
AKAVLENKVT KARKPYMHYS RHLHAMRRPR GCGGRFLNTK SSNSGKDGIK MSKAAQGKLS  240
HSAVSQNSEV LQSDSGTLNS SKEANGGGST LSGSEVTSMY SRVDLEHFPI NHLGLSVHTL  300
PRMVDNGRGT VMPSKWVATG DNCCNLKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-70NF-YA family protein