PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289164.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 482aa MW: 52892.4 Da PI: 6.895

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.8	2.8e-18	103	189	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea+ e+ ++l+rg+l++ +We+v++++ r ++ ++s +qCk+k +nl+kryk ++++++++ ++s++p+f+++e XP_021289164.1 103 EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEDVAAAVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSDG-GVTVSHWPWFKKME 189 5***********************************777778899*********************9.55667******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MASSVDDDFS LLDDHQTNPN HHHVLHHHHH PSYAPIHAPP PDNHDADDDS DSAFRGANFD 60 NNNNNVTSSD VPIEKRRDQE EINDGVLKRP KQSTTEYRKD REEWSDAAIG CLLEAYMEKL 120 TQLNRGNLRG RDWEDVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGVTVS 180 HWPWFKKMEE IVGNSLPVKA APDEDKAGAS PGTAVRQSKS RYASATPSSA GQIISMKSKS 240 PKWRRVVFKI SGAALACTGP HNIDPKVAML IAREVAIACR LGVEVAIVVG GRNFFCGDTW 300 VSATGLDRST AYQIGMMASV MNSILLQSSL EKMGVQTRVQ TAFSVQEVAE PYSRQRAIRH 360 LEKGRVVIFG GIGAGTGNPL FSTDTAAALR ASEIHAEAVL KGTNVDGVYD CHSQDNNATF 420 EHISFRELVS RGATAMDMMA LTFCEENGIP VVVFNLLQPG NISKALCGDQ VGTLIDQTGR 480 IS

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MASSVDDDFS LLDDHQTNPN HHHVLHHHHH PSYAPIHAPP PDNHDADDDS DSAFRGANFD  60
NNNNNVTSSD VPIEKRRDQE EINDGVLKRP KQSTTEYRKD REEWSDAAIG CLLEAYMEKL  120
TQLNRGNLRG RDWEDVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGVTVS  180
HWPWFKKMEE IVGNSLPVKA APDEDKAGAS PGTAVRQSKS RYASATPSSA GQIISMKSKS  240
PKWRRVVFKI SGAALACTGP HNIDPKVAML IAREVAIACR LGVEVAIVVG GRNFFCGDTW  300
VSATGLDRST AYQIGMMASV MNSILLQSSL EKMGVQTRVQ TAFSVQEVAE PYSRQRAIRH  360
LEKGRVVIFG GIGAGTGNPL FSTDTAAALR ASEIHAEAVL KGTNVDGVYD CHSQDNNATF  420
EHISFRELVS RGATAMDMMA LTFCEENGIP VVVFNLLQPG NISKALCGDQ VGTLIDQTGR  480
IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein