PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021289128.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 558aa MW: 61159.7 Da PI: 8.2027

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021289128.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.8e-17	62	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_021289128.1 62 KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 108 688***************************.**********986 PP
2	Myb_DNA-binding	60.2	4.3e-19	114	160	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_021289128.1 114 KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 160 79****************************.***********97 PP
3	Myb_DNA-binding	53.5	5.4e-17	166	209	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_021289128.1 166 KDAWTLEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 209 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MAELTMVERC IENKQLTTAS SSSVSEGGGG VVVKSPGISS PAPSSPNHRY CQRTTGPIRR 60 AKGGWTPEED ETLRNAVAAF KGKSWKKIAE FFPDRSEVQC LHRWQKVLNP DLVKGPWTQE 120 EDDKIIELVS RYGPTKWSVI AKSLPGRIGK QCRERWHNHL NPDIKKDAWT LEEELALMNA 180 HRIYGNKWAE IAKVLPGRTD NAIKNHWNSS LKKKLDFYLA TGKLPPVGKN GLQNGAKDMN 240 SSAATKSLLV CSKKESDSTA QTSSGTTDIC KPEEDGKDQL ESSAPVQGMA ASSSVIPNES 300 ADTESAEGKP QSFDANPCCC NSEPRAKFES RGISSAIVED KVVETQVWHD SPTYGSLCYE 360 PPRLQGVTSL DSDNLNNKGM QPEWTSSPIT SPISFFTPPS VKGSGLSAHS PESILRFAAK 420 SFPNTPSIFR KRKTGAQSLM LPKMGRMEET VKNRIQLSGE QERTENSLEQ APLRDGSSCE 480 SPACLGTSSV GPNCIAFNAS PPYRLRSKRT AVFKSVERQL EFTFDKERHE DNAKSSDLSM 540 NGSSPIEDCL NATKMGVT

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MAELTMVERC IENKQLTTAS SSSVSEGGGG VVVKSPGISS PAPSSPNHRY CQRTTGPIRR  60
AKGGWTPEED ETLRNAVAAF KGKSWKKIAE FFPDRSEVQC LHRWQKVLNP DLVKGPWTQE  120
EDDKIIELVS RYGPTKWSVI AKSLPGRIGK QCRERWHNHL NPDIKKDAWT LEEELALMNA  180
HRIYGNKWAE IAKVLPGRTD NAIKNHWNSS LKKKLDFYLA TGKLPPVGKN GLQNGAKDMN  240
SSAATKSLLV CSKKESDSTA QTSSGTTDIC KPEEDGKDQL ESSAPVQGMA ASSSVIPNES  300
ADTESAEGKP QSFDANPCCC NSEPRAKFES RGISSAIVED KVVETQVWHD SPTYGSLCYE  360
PPRLQGVTSL DSDNLNNKGM QPEWTSSPIT SPISFFTPPS VKGSGLSAHS PESILRFAAK  420
SFPNTPSIFR KRKTGAQSLM LPKMGRMEET VKNRIQLSGE QERTENSLEQ APLRDGSSCE  480
SPACLGTSSV GPNCIAFNAS PPYRLRSKRT AVFKSVERQL EFTFDKERHE DNAKSSDLSM  540
NGSSPIEDCL NATKMGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-156	MYB family protein