PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021289009.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 538aa    MW: 60827.6 Da    PI: 4.4209
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021289009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1502.2e-461695343374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL +  ea++++++elaq ++  + e asp g++ +R+a+ + +  +++             ++e+    s +  +a+++f++++P+ +f+h++
  XP_021289009.1 169 HLLNAYGEAIEKNQTELAQVIMRCVGEKASPVGETWERIAFSLSQSFQNQSDY---------LMQES----SRNFETAFRAFYQMFPYGRFAHFA 250
                     8999999**********************************999999887665.........22233....456678899*************** PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     aN+aIlea+ ++ +++Hi+Dfdi++G+QWp+L++a+a +     +lR+T +   e++   s  + e t+++L + A++lg++++ + +    +ed
  XP_021289009.1 251 ANSAILEAMPNDaNMLHIVDFDIGEGIQWPPLIEAMAWQ---HKTLRLTSIRWGEEDfapSPWRFEDTRRQLCDHARSLGLKLKVEEM---GIED 339
                     *********9997999*********************96...457******998888999999***********************98...4444 PP

            GRAS 189 l..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqe..adh.nsesFlerflealeyysalfd 269
                     l  el++++ +   +E la n+++ l ++   +++ ++  +++L++ k+l +        +v + + +  a++ + + F + f   l +y a+++
  XP_021289009.1 340 LanELKKMKKRGgtREWLAFNCMVGLPHMG--KGKCPKFVNQFLNVAKELLASsvprnrgIVAFGDGDacAKLkDCSGFGTFFDGLLMHYQAVLE 432
                     41134455444366***************9..888888899*******99543222234488899988644555667899999999********* PP

            GRAS 270 sleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvl 360
                     s++++++++  ++r+ +E  ++g++i+     ++ + +e+++   + +    e  ++ +++s++  ++ak ++r+ + + ++v    +  ++l l
  XP_021289009.1 433 SMQSNFAEHLmQARMAMECLFVGPSICPQAWFQKWKEIEETR---HFQ---AETALEGLRVSTERLMEAKEIVREKE-NLFEVSiggNCGNELAL 520
                     **999988878****************999888888444444...444...4566777789**************99.669998666669999** PP

            GRAS 361 gWkdrpLvsvSaWr 374
                      W++ +Lv vS Wr
  XP_021289009.1 521 EWRGTTLVRVSNWR 534
                     *************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MMESENFPLL WPFDDFMNPT TDQFESHDLN MSGHFNGCEF SSSFTTREDS SDISSVSHFS  60
TMFSGEVFPF PACDDQLQVT VPLEDFSVVP LEGLESMLTD GIEDLYNCLD ESSEESFPSL  120
PLSSQGQDVW SPSPSVRSSE ASTDVTSMQS SLTMPGVAME IDNQLSIFHL LNAYGEAIEK  180
NQTELAQVIM RCVGEKASPV GETWERIAFS LSQSFQNQSD YLMQESSRNF ETAFRAFYQM  240
FPYGRFAHFA ANSAILEAMP NDANMLHIVD FDIGEGIQWP PLIEAMAWQH KTLRLTSIRW  300
GEEDFAPSPW RFEDTRRQLC DHARSLGLKL KVEEMGIEDL ANELKKMKKR GGTREWLAFN  360
CMVGLPHMGK GKCPKFVNQF LNVAKELLAS SVPRNRGIVA FGDGDACAKL KDCSGFGTFF  420
DGLLMHYQAV LESMQSNFAE HLMQARMAME CLFVGPSICP QAWFQKWKEI EETRHFQAET  480
ALEGLRVSTE RLMEAKEIVR EKENLFEVSI GGNCGNELAL EWRGTTLVRV SNWRQDQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-20GRAS family protein