PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288969.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 477aa MW: 53696.7 Da PI: 8.4138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288969.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.7e-09	350	397	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++q+G g+W+ I r + Rt+ +++++w+++l XP_021288969.1 350 WTLAEVIKLVDGIAQYGVGRWTDIKRLLFassAYRTPVDLRDKWRNLL 397 ******************************99**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MKTDRKPHLI KKLSDMKRQR VDESIVPGLE DEATEVEHLL AEPKSEHVSV DGVLCLGKEN 60 LEKHLKMEDF SCAFDYGWKI NCGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIHAAHDL 120 SGACEDFLLD IEFPEKFAEL EPCEGSNLHN SSSESHSPGF SGSSNSAGGI SESSIAAVQE 180 SNGRNGVLGK MVNCDVHQTF WSKCGCQAPV MDTIHPTIEN VQDLDQSDDD EKPLVSFILS 240 NKKVKSSVKV TRGGTLLRQK RLRKPTRRYI EEFSRNSTAS GKNKRLKVRS QELPQDPSES 300 RPRRGRPRKI VPQLELESDY ELSASESEDE LEKSKRSKTA CDRRKHQRMW TLAEVIKLVD 360 GIAQYGVGRW TDIKRLLFAS SAYRTPVDLR DKWRNLLRSS SALKHNRREV DNDLKHAVRP 420 LPKPVVRRIR ELATIHPYPR VRSPKISPVD APSSKHPTTK GAPVYPHARN LRRKKCS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MKTDRKPHLI KKLSDMKRQR VDESIVPGLE DEATEVEHLL AEPKSEHVSV DGVLCLGKEN  60
LEKHLKMEDF SCAFDYGWKI NCGGLDSIHG QGGDDLKLEV LDGLLDEVDE VDDIHAAHDL  120
SGACEDFLLD IEFPEKFAEL EPCEGSNLHN SSSESHSPGF SGSSNSAGGI SESSIAAVQE  180
SNGRNGVLGK MVNCDVHQTF WSKCGCQAPV MDTIHPTIEN VQDLDQSDDD EKPLVSFILS  240
NKKVKSSVKV TRGGTLLRQK RLRKPTRRYI EEFSRNSTAS GKNKRLKVRS QELPQDPSES  300
RPRRGRPRKI VPQLELESDY ELSASESEDE LEKSKRSKTA CDRRKHQRMW TLAEVIKLVD  360
GIAQYGVGRW TDIKRLLFAS SAYRTPVDLR DKWRNLLRSS SALKHNRREV DNDLKHAVRP  420
LPKPVVRRIR ELATIHPYPR VRSPKISPVD APSSKHPTTK GAPVYPHARN LRRKKCS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	309	RRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-24	MYB_related family protein