PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021288105.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 345aa MW: 38252.5 Da PI: 8.4243

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021288105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.7	8e-17	238	336	1	96
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f k+lt sd+ ++ grlvlpk++ae++ +++ ++++ ++++d +g We++++y + ++++yvl+ G k++ + + + gD+v+F+ ++++++ XP_021288105.1 238 FSKTLTASDAEARnGRLVLPKRCAEAYfpDISAQQGIFVVVQDIKGDDWEFYYRYwsNTNGKMYVLE-GLKDYIISEQWQPGDTVTFY-KREEDG 330 8899**9988769**********8888899***************544444458888.******************.444999 PP ..EEEE CS B3 91 elvvkv 96 +l++++ XP_021288105.1 331 KLFMGL 336 888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MASSSSAFTK LCFHCKAPSV NFFIGWQLRN GGFAMLCYSC GSAYSKGTFC DTFHPEATGW 60 RDCASCRKRI HCGCIMASST YTILDFGGVK CTECAVNEAL APHRCSPSFW SPQAIQHAMD 120 SAKRLYIDHE KAITGIKSGI DPIASPNSVV CNVLPKKIAT PTIPGAAFQA QFPLSETGEE 180 SSVNSPDGTN NSCQKKGGKH RKDVYRKTRV QSRYSPQTSL EELKEICRVS QSSLVPLFSK 240 TLTASDAEAR NGRLVLPKRC AEAYFPDISA QQGIFVVVQD IKGDDWEFYY RYWSNTNGKM 300 YVLEGLKDYI ISEQWQPGDT VTFYKREEDG KLFMGLKKVQ AGKSD

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MASSSSAFTK LCFHCKAPSV NFFIGWQLRN GGFAMLCYSC GSAYSKGTFC DTFHPEATGW  60
RDCASCRKRI HCGCIMASST YTILDFGGVK CTECAVNEAL APHRCSPSFW SPQAIQHAMD  120
SAKRLYIDHE KAITGIKSGI DPIASPNSVV CNVLPKKIAT PTIPGAAFQA QFPLSETGEE  180
SSVNSPDGTN NSCQKKGGKH RKDVYRKTRV QSRYSPQTSL EELKEICRVS QSSLVPLFSK  240
TLTASDAEAR NGRLVLPKRC AEAYFPDISA QQGIFVVVQD IKGDDWEFYY RYWSNTNGKM  300
YVLEGLKDYI ISEQWQPGDT VTFYKREEDG KLFMGLKKVQ AGKSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	4e-62	B3 family protein