PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287255.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 373aa    MW: 41978.6 Da    PI: 6.4496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.7e-24953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    kr e++snrqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tg+
  XP_021287255.1  9 KRLESTSNRQVTYSKRRTGILKKAKELSILCDIDIILLMFSPTGR 53
                    689****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MGRVKLKIKR LESTSNRQVT YSKRRTGILK KAKELSILCD IDIILLMFSP TGRPTLFHGE  60
HSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNILDFIGAT QSVEEMTNEV  120
SMLQAQLTEV HKRLSYWSNP DKIDNIEHLR QMEDILRESI ERIRIHKENF GKHHLMSLEC  180
TSQFQNGIPL PMMIGGVQEA QPVTWLPNND NQHMLLHNEP SFLSHRDAEC SADGSFAGYS  240
GFFGSGKQIE IGSSGQVDNV VQESSALNEL GSNACLSLQL GEQYLYPPYS ASNLQDDEKL  300
KPEMEVNLPG NPAGYQVVSN FEIPRPMYNS GPQARISSSG PCGIMMFDGN SYHQQTKSTF  360
MNQTPPSGEL HNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-106M-type_MADS family protein