PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286963.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 379aa MW: 42749 Da PI: 5.2993

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.2	2.9e-07	18	58	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C++++ +l+C +++++lC++C + +H H+ XP_021286963.1 18 RTCDTCQAAACTLYCYTDSSYLCKSCDERIHAAnpmalsHQ 58 79****99*******************6567777776 PP
2	zf-B_box	23.1	1.5e-07	59	105	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 + ++C+ +e+ + C+ + lC +C e+H + H +vp+ XP_021286963.1 59 RVWICTVCENAAAAVTCRADAASLCIKCDIEIH-SvnllarrHIRVPI 105 5789*****9*******************.44777777887775 PP
3	CCT	69.3	1e-23	313	356	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk RkFeKkirY+sRKa+Ae+RpRvKGrF++++ XP_021286963.1 313 REAKVLRYREKRKARKFEKKIRYASRKAYAETRPRVKGRFARKT 356 9****************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MLKVGSGGDG YVPSYWARTC DTCQAAACTL YCYTDSSYLC KSCDERIHAA NPMALSHQRV 60 WICTVCENAA AAVTCRADAA SLCIKCDIEI HSVNLLARRH IRVPIPPLSG LACSSSSTHQ 120 DELRGPMFGM ENEIAAATIN EKIDEDETDS WLLLEPDNTD NQTISGFTYG EKVDEYMDVR 180 DTSTEYQCQE QCSDQQQLLC VNYPEDSGSD IDVPVQTFES KNQSQQQEKQ LQQQTHQWLQ 240 SIYFNTEHRR SKAAFINTPS STLSVPIPLI TAGILPNATS NIPSTYTGFP NGATDLFPYP 300 LPLFPLQFTP MNREAKVLRY REKRKARKFE KKIRYASRKA YAETRPRVKG RFARKTDMEI 360 EDDQLFSKED YGYGIVPSL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MLKVGSGGDG YVPSYWARTC DTCQAAACTL YCYTDSSYLC KSCDERIHAA NPMALSHQRV  60
WICTVCENAA AAVTCRADAA SLCIKCDIEI HSVNLLARRH IRVPIPPLSG LACSSSSTHQ  120
DELRGPMFGM ENEIAAATIN EKIDEDETDS WLLLEPDNTD NQTISGFTYG EKVDEYMDVR  180
DTSTEYQCQE QCSDQQQLLC VNYPEDSGSD IDVPVQTFES KNQSQQQEKQ LQQQTHQWLQ  240
SIYFNTEHRR SKAAFINTPS STLSVPIPLI TAGILPNATS NIPSTYTGFP NGATDLFPYP  300
LPLFPLQFTP MNREAKVLRY REKRKARKFE KKIRYASRKA YAETRPRVKG RFARKTDMEI  360
EDDQLFSKED YGYGIVPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-57	CO-like family protein