PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286028.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

DBB

Protein Properties

Length: 299aa MW: 33430.6 Da PI: 6.4048

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.7	9.8e-08	5	42	6	37
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++++e+ fC ++ lCe C H+ H XP_021286028.1 5 CDVCDKEEAVVFCSADEAALCEGCDRRVHHAnklarkH 42 **************************996443666666 PP
2	zf-B_box	26.6	1.2e-08	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ ++e ++ lfC++++ lC++C l +H+ Ht XP_021286028.1 54 ESPLCDICQERRAFLFCQEDRAILCRECDLPIHRTneHT 92 6789*****************************778865 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MKIWCDVCDK EEAVVFCSAD EAALCEGCDR RVHHANKLAR KHSRFSLLHP TFKESPLCDI 60 CQERRAFLFC QEDRAILCRE CDLPIHRTNE HTQKHNRFLL TGVMLSSSSS PCLNPTSSSS 120 NGHNATTIDS ETKSPQSSKR FHSVSNNEIF SSPSIEKPLP STTYKVEDNC TSDTVSISTS 180 SISEYLMETL PGWRVDDFLE PSSAANGFCK TFEQFVPVKG RDCVNLLSCS PSEAVWVAQV 240 SPPQSPQLSC FIPQNDLVDG FKELQEANVL NFGCGWNFES RIVPQISSSS SLKKSRQFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	5e-66	DBB family protein