PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285409.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 2126aa MW: 233616 Da PI: 8.7737

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.7e-06	1982	2003	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f +tG C+ G++Ck +H++ XP_021285409.1 1982 CPNFEATGSCPQGSKCKLHHPK 2003 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2126 aa Download sequence
MDPSSYVNHH HHHHHHHHRQ NNHTRYAPLS PPLHLLSPPP PPPPPHAPPY QQSPNNLYPS 60 LYPVPPPQPP PQLAPLPPPP KQPQQQPYHP LPAPPPSVPR QQHPNHHPYN PQHPQYAFNP 120 NFNSNANPNN VSHQFHDFPQ RRLPEFDARP EYWPENRASR PHSVSSLDRE AHYHQFDRRP 180 VSSAVDRFRH DVEGSSRYRA LELNLRERPE LGRVYSDNWI PDRASRDVGI VSMGFESNSN 240 NSGFYHKVAE NVRWGSHVRD QLIDNGNNEI NERDEMRIFS RKIDYYQDSE LERFSDRGSR 300 REDSHEFNRA PRKQMQKQSA LLRIQKAQQN HRNREDERSH YLGYNNEGKT GTFRGKDLVL 360 HSDHGLEERE REVSPVELDV SFKSNSLVAK AIVTPSSSSP VSDLNVKPRT SKIRKVMIFD 420 KANESSAKLD VSTSVLNGGS GSEDSKQSVG KVKSSGIGNV HDGVTKPCSK RTNVPLRNGK 480 LERSSRVTVK LDDLTCVTED TPITDKKPES LEGKGTIPCI GNMRDSGLQT CSNRDNVSIR 540 ENKVEGTLKS TLSGKSGASV GKPSSLKATK KKKIVRKMEK KVTNSPLNLA NSKSPKSCDQ 600 PVKADTSTYC LSALSVADKS VTPPKMKIAS AAGCSAGAVG LECCPKESAL LLENEKVTEA 660 LKDVVSKEVG SDVDPGSSVA PKIKRKRNSS TLSLGSSGHE ESKVDQGFVN SDNSGFGLRI 720 VSNIKEDHAE TLNESIPSRT FSVEDINKQF YHSENNNDGL LRSEDINVHE DMVDIGSSSV 780 AMHGAPGFEC GSSNSQEINI ACDIGNVNSG SKQVCATPGN PVVEDGTTGR LPEANCSAGS 840 NKMPHLPCSE ETQINSGSIY ADCSNHNRST IHTPDIGYVN LGESNCEIGD DFVKHLVPST 900 LSLGNSGAER IPNAMESLEC TAGSADVLTS ANCLDTTIIT SGVNSTPPEV MVSGFGWLDT 960 FREVSASADG KSPENKKRKI STSSSGVTAS VINQDVAVSN ISKSAVQLPS NFTEDQLQLE 1020 QEVTVSSIDG LHKEGIDLLL VNSAVVGPSQ AVGFFRDAYQ IDHPRIDPCS AFVESVAPSS 1080 PCLHLLKLGG DQLSTATQVS AQNNHQIGSM DIEGDDKGKV PVGTAEEQKF ISSEVSQCRI 1140 TPEHMSSSLD QRLPSTDVED DNHFPLKDDL PSALNSLVFG VDANEVSATN SNDEVMPAPD 1200 IVSDVGSPYN HDNFVISTST CKAPLCQQSE KQAFGDEKFL DDKPMAEGAC NISALVSYSQ 1260 HSKTILKSND AIQTNQSVAG KAVLLPSHDS KATRGRKNLL SHVVPKSYPA RSSYVFSASK 1320 NTTSSTNITK PRTWHRTNNS SASPLSGNKP SSSANPLQRQ MPRKAAFFQS TSYIRKGNSL 1380 VRKPVAVPAL PQGSLSLSSS VYWMNPGATD EVKKGTGPSS RVGAVDLRTG GANTSFERPT 1440 TPPLPSVSKV PNCTSYSSGE CTSSPLAEPS ISDCCETTIN HASSMEISDV LNSPEDGLKT 1500 FETLNQNGSV NNLEELTEQS ESNLVPSNAK LVTYVKPKSN QLVATSECGR TSILNADKNQ 1560 NFSAPSDGYY KKSKNQLIRT ALESHIKQAV AMSDDRTSSV GQVAAKVMPS RTVGKRQSNK 1620 VVGKGHKPSK FSLVWTLHSA RHSNNDGNSL RCPKVLPQLF PWKRMTYRRS LKLNSVSSCN 1680 SSLSTISRKM LLSRKRNTVY TRSINGFSIR KSKVFSVGGS SLKWSKSIER NSRKANEEAT 1740 LAVAEAERKK REQKGTVSGT GKRSYSCHKV VHGTDLRPGE RVFRIGSVRY KMDSSRHSLQ 1800 RISDDESSCS SGHLSENSTK KTYVPRRLVI GNDEYVRIGN GNQLVRDPKK RTRVLASEKV 1860 RWSLHTARLR LVKKRKYCQF FTRFGKCNKD DGKCPYIHDP SKIAVCTKFL KGLCSNPSCK 1920 LTHKVIPERM PDCSYFLQGL CTNENCPYRH VHVNPNASTC EGFLRGYCAD GNECRKKHSY 1980 VCPNFEATGS CPQGSKCKLH HPKIQSKGKK SKRSMKHNNA HRRYFGIDML APKRMVPESH 2040 RALDDDDMFF DGKFSDYIRL DVSDDDTGEI HQLMNDQTTF GDNDSSDIVL DDLDELIKPI 2100 RIMNRXKMTE SFLVSEGSSV KHAALQ

Sequence ? help Back to Top

Protein Sequence Length: 2126 aa Download sequence

MDPSSYVNHH HHHHHHHHRQ NNHTRYAPLS PPLHLLSPPP PPPPPHAPPY QQSPNNLYPS  60
LYPVPPPQPP PQLAPLPPPP KQPQQQPYHP LPAPPPSVPR QQHPNHHPYN PQHPQYAFNP  120
NFNSNANPNN VSHQFHDFPQ RRLPEFDARP EYWPENRASR PHSVSSLDRE AHYHQFDRRP  180
VSSAVDRFRH DVEGSSRYRA LELNLRERPE LGRVYSDNWI PDRASRDVGI VSMGFESNSN  240
NSGFYHKVAE NVRWGSHVRD QLIDNGNNEI NERDEMRIFS RKIDYYQDSE LERFSDRGSR  300
REDSHEFNRA PRKQMQKQSA LLRIQKAQQN HRNREDERSH YLGYNNEGKT GTFRGKDLVL  360
HSDHGLEERE REVSPVELDV SFKSNSLVAK AIVTPSSSSP VSDLNVKPRT SKIRKVMIFD  420
KANESSAKLD VSTSVLNGGS GSEDSKQSVG KVKSSGIGNV HDGVTKPCSK RTNVPLRNGK  480
LERSSRVTVK LDDLTCVTED TPITDKKPES LEGKGTIPCI GNMRDSGLQT CSNRDNVSIR  540
ENKVEGTLKS TLSGKSGASV GKPSSLKATK KKKIVRKMEK KVTNSPLNLA NSKSPKSCDQ  600
PVKADTSTYC LSALSVADKS VTPPKMKIAS AAGCSAGAVG LECCPKESAL LLENEKVTEA  660
LKDVVSKEVG SDVDPGSSVA PKIKRKRNSS TLSLGSSGHE ESKVDQGFVN SDNSGFGLRI  720
VSNIKEDHAE TLNESIPSRT FSVEDINKQF YHSENNNDGL LRSEDINVHE DMVDIGSSSV  780
AMHGAPGFEC GSSNSQEINI ACDIGNVNSG SKQVCATPGN PVVEDGTTGR LPEANCSAGS  840
NKMPHLPCSE ETQINSGSIY ADCSNHNRST IHTPDIGYVN LGESNCEIGD DFVKHLVPST  900
LSLGNSGAER IPNAMESLEC TAGSADVLTS ANCLDTTIIT SGVNSTPPEV MVSGFGWLDT  960
FREVSASADG KSPENKKRKI STSSSGVTAS VINQDVAVSN ISKSAVQLPS NFTEDQLQLE  1020
QEVTVSSIDG LHKEGIDLLL VNSAVVGPSQ AVGFFRDAYQ IDHPRIDPCS AFVESVAPSS  1080
PCLHLLKLGG DQLSTATQVS AQNNHQIGSM DIEGDDKGKV PVGTAEEQKF ISSEVSQCRI  1140
TPEHMSSSLD QRLPSTDVED DNHFPLKDDL PSALNSLVFG VDANEVSATN SNDEVMPAPD  1200
IVSDVGSPYN HDNFVISTST CKAPLCQQSE KQAFGDEKFL DDKPMAEGAC NISALVSYSQ  1260
HSKTILKSND AIQTNQSVAG KAVLLPSHDS KATRGRKNLL SHVVPKSYPA RSSYVFSASK  1320
NTTSSTNITK PRTWHRTNNS SASPLSGNKP SSSANPLQRQ MPRKAAFFQS TSYIRKGNSL  1380
VRKPVAVPAL PQGSLSLSSS VYWMNPGATD EVKKGTGPSS RVGAVDLRTG GANTSFERPT  1440
TPPLPSVSKV PNCTSYSSGE CTSSPLAEPS ISDCCETTIN HASSMEISDV LNSPEDGLKT  1500
FETLNQNGSV NNLEELTEQS ESNLVPSNAK LVTYVKPKSN QLVATSECGR TSILNADKNQ  1560
NFSAPSDGYY KKSKNQLIRT ALESHIKQAV AMSDDRTSSV GQVAAKVMPS RTVGKRQSNK  1620
VVGKGHKPSK FSLVWTLHSA RHSNNDGNSL RCPKVLPQLF PWKRMTYRRS LKLNSVSSCN  1680
SSLSTISRKM LLSRKRNTVY TRSINGFSIR KSKVFSVGGS SLKWSKSIER NSRKANEEAT  1740
LAVAEAERKK REQKGTVSGT GKRSYSCHKV VHGTDLRPGE RVFRIGSVRY KMDSSRHSLQ  1800
RISDDESSCS SGHLSENSTK KTYVPRRLVI GNDEYVRIGN GNQLVRDPKK RTRVLASEKV  1860
RWSLHTARLR LVKKRKYCQF FTRFGKCNKD DGKCPYIHDP SKIAVCTKFL KGLCSNPSCK  1920
LTHKVIPERM PDCSYFLQGL CTNENCPYRH VHVNPNASTC EGFLRGYCAD GNECRKKHSY  1980
VCPNFEATGS CPQGSKCKLH HPKIQSKGKK SKRSMKHNNA HRRYFGIDML APKRMVPESH  2040
RALDDDDMFF DGKFSDYIRL DVSDDDTGEI HQLMNDQTTF GDNDSSDIVL DDLDELIKPI  2100
RIMNRXKMTE SFLVSEGSSV KHAALQ