PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285323.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 554aa    MW: 62076.3 Da    PI: 4.8195
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.71.1e-1381865543374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L+ecA ++s+g+ e+a+a+++ l++ +s +gdp qR+aay++e+L ar+a+s++ lykal+++e +   ss++laa+++++ev+P++kf++++
  XP_021285323.1 186 QMLIECAAVLSEGNIEEASAIINDLRQKVSIQGDPPQRIAAYMVEGLVARMAESGKYLYKALRCKEPP---SSDRLAAMQILFEVCPCFKFGFMA 277
                     79*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+rvHiiDfdisqG Q+++L+q++a+Rp++pp+lR+Tgv++pes+   +  l  +g rL+k+Ae+l+vpfef++ va+r++ ++
  XP_021285323.1 278 ANGAIIEAFKDEKRVHIIDFDISQGSQYITLIQTIAKRPGKPPHLRLTGVDDPESVqrLNGGLAIVGLRLEKLAEALDVPFEFQA-VASRTSLVT 371
                     ******************************************************99777889***********************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres++r++v
  XP_021285323.1 372 PSMLDCRPGEALIVNFAFQLHHMPDESVSTINQRDQLLRMVKSLNPKLVTVVEQDVNTNTSPFFPRFVEAYSYYSAVFESLDATLPRESQDRMNV 466
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s ++ + ++ l+r++ ++ y+++e+ g+l +gW+d++L+++SaWr
  XP_021285323.1 467 ERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSCPMSPNVIDMIRKLIREYCDR-YKLKEDLGALHFGWEDKSLIVASAWR 554
                     ************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    
MSLVRSAEPA TAAYRNTKLY SLQGSDSSGL SAQMFGSHKH KPVYITDSYS SESYEKYFLD  60
SPTEELIQPS SSGISGSSFR PKDVSSFQLR DYLEIQSPET LDSDTDKMKL KLQELERALL  120
ADNDVDEDDD MFGTGISMEI DGEWSDPIRT ESLHDSPKES SSSDSNLSSF SSNKEVSHVS  180
SRSPKQMLIE CAAVLSEGNI EEASAIINDL RQKVSIQGDP PQRIAAYMVE GLVARMAESG  240
KYLYKALRCK EPPSSDRLAA MQILFEVCPC FKFGFMAANG AIIEAFKDEK RVHIIDFDIS  300
QGSQYITLIQ TIAKRPGKPP HLRLTGVDDP ESVQRLNGGL AIVGLRLEKL AEALDVPFEF  360
QAVASRTSLV TPSMLDCRPG EALIVNFAFQ LHHMPDESVS TINQRDQLLR MVKSLNPKLV  420
TVVEQDVNTN TSPFFPRFVE AYSYYSAVFE SLDATLPRES QDRMNVERQC LARDIVNIVA  480
CEGEERIERY EVAGKWRARM MMAGFTSCPM SPNVIDMIRK LIREYCDRYK LKEDLGALHF  540
GWEDKSLIVA SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein