PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021285124.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 331aa    MW: 36453.1 Da    PI: 4.7654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021285124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13101152155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  XP_021285124.1 101 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 152
                     79***************************9...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDDTLCDFLE EPEFGETNLA GDDLFALFEG LDGLPEFPPF TPLEETGAAT QKDGEEATRL  60
VSQKSTSSSA QQESETEPET PPKSKRQKLA SSEETNPDGQ QRMSHITVER NRRKQMNEHL  120
SVLRSLMPCF YVKRGDQASI IGGVVDYINE LQQVLQSLEA KKQRKVYSEV LSPRIVSSPR  180
PSPLSPRKPP LSPRINLPIS PRTPQPGSPY RPRLQQGYLS PTMTSSLEPS PTSSASSVDN  240
VNELVANSKS PIADVEVKFS GPNLLLKTVS PRIPGQAVKI ISALEDLSLE ILHVNINTAD  300
ETMLNSFTIK IGIECQLSAE ELAHQVQQTF C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102113RMSHITVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-103bHLH family protein