PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284818.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 434aa MW: 47186.4 Da PI: 5.6598

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	276	324	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq XP_021284818.1 276 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 324 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MATGDNDDVG FKDRHESLMN CPSSQINTNP VSDKVNGMAM SSISMYNKPS NASDSFFGSG 60 WDPIVSLSQS ESLVGSSMVS HSEFANSHYP LLMENQGISS TSHFSQYQSD PSFVELVPKL 120 PGFGSGNLSE MVGPFSLPQC GQIANSKCPQ NYALNTEVGN ERTCTNSTQS RDEHQLSDEG 180 VVGASPNGKR RKRVPESNSP LRSYQNADEE PQKDPSGESS DVPKEQDEKK QKTEQITGVN 240 SRGKQVAKQA KDSSQTGEAP KENYIHVRAR RGQATNSHSL AERVRREKIS ERMRLLQELV 300 PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE LNIDLERVLS KDILHSRGGS 360 AGILGFGPGL NSSHPFPPGI FPGTISGVPS TNPQFPPLPQ TVLDNELQSL LQMGFDSNSA 420 MDSLGPNGRL KSEL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MATGDNDDVG FKDRHESLMN CPSSQINTNP VSDKVNGMAM SSISMYNKPS NASDSFFGSG  60
WDPIVSLSQS ESLVGSSMVS HSEFANSHYP LLMENQGISS TSHFSQYQSD PSFVELVPKL  120
PGFGSGNLSE MVGPFSLPQC GQIANSKCPQ NYALNTEVGN ERTCTNSTQS RDEHQLSDEG  180
VVGASPNGKR RKRVPESNSP LRSYQNADEE PQKDPSGESS DVPKEQDEKK QKTEQITGVN  240
SRGKQVAKQA KDSSQTGEAP KENYIHVRAR RGQATNSHSL AERVRREKIS ERMRLLQELV  300
PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE LNIDLERVLS KDILHSRGGS  360
AGILGFGPGL NSSHPFPPGI FPGTISGVPS TNPQFPPLPQ TVLDNELQSL LQMGFDSNSA  420
MDSLGPNGRL KSEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-96	bHLH family protein