PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284808.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 340aa MW: 38229 Da PI: 8.0546

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++q+G+g +W + ++++g++R++k+c++rw++yl XP_021284808.1 14 KGPWSPEEDAKLKEYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.6	2.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd+++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_021284808.1 69 GGFSEEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MGRAPCCDKA SVKKGPWSPE EDAKLKEYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQSRRG NSLKQEMKRG NGNSMIPDHS NQSPYWPELA VLAPIPYSSE DQRIDSQASM 180 RRLLIKLGGR FSEAEHVISD GTTLHQFPND SSSTQQLYEQ TVHIPSSSPH MDVLNNNIGT 240 QFVNSQYTSI DGTNLHMLQG QSSFSSELQE MAYSNPQRLD GMEFLYGEDM VNNRAVNSCV 300 SIGWGDTSSL VCPPVTSEYG GLQQGMLQEY AFSELRYPGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-76	MYB family protein