PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284720.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family BBR-BPC
Protein Properties Length: 326aa    MW: 35935.6 Da    PI: 9.8825
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.64.5e-11913261301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla... 92 
                     mdd+g+re   g  + + + +   + q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern a+verdn++++l+++ensla   
  XP_021284720.1   1 MDDSGHRE--NGRLKTD-QYR-TAQGQVMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNSAIVERDNAIANLQYRENSLAtgn 91 
                     89999955..4544444.344.34579***************************************************************99998 PP

       GAGA_bind  93 .salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesa 183
                       ++p+g+q+++g+k++++ qq +++ p++++ +++ re++ +++lp +  ++ea ++k+ k++++ak+  ++k+  k+ kk + ++++ +k   
  XP_021284720.1  92 mPSCPPGCQISRGVKHVQHPQQnVHHlPHINEAPYNSREMHSSDTLPFTPGTSEAAKSKQGKRGKEAKVIASSKKApKPPKKVKRENEDLNKI-- 184
                     889*******************76779********************8887777777777776666665444333334444333344443333.. PP

       GAGA_bind 184 der..........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
                                                  +k+++k +dl+ln+v +D+st+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+
  XP_021284720.1 185 --MfgkshewkggqdvggggddlnkqlvaTKSDWKGQDLGLNQVVFDDSTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRH 277
                     ..0333467899*********************************************************************************** PP

       GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +Ri+grKmS++af+klL++LaaeG+dlsn vDLkdhWAkHGtn+++ti+
  XP_021284720.1 278 TRIGGRKMSGSAFNKLLSRLAAEGHDLSNSVDLKDHWAKHGTNRYITIK 326
                     ************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MDDSGHRENG RLKTDQYRTA QGQVMAIMAE RDAAIQERNL ALSEKKAAIA ERDMAFLQRD  60
AAIAERNSAI VERDNAIANL QYRENSLATG NMPSCPPGCQ ISRGVKHVQH PQQNVHHLPH  120
INEAPYNSRE MHSSDTLPFT PGTSEAAKSK QGKRGKEAKV IASSKKAPKP PKKVKRENED  180
LNKIMFGKSH EWKGGQDVGG GGDDLNKQLV ATKSDWKGQD LGLNQVVFDD STMPPPVCSC  240
TGVLRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHTRI GGRKMSGSAF NKLLSRLAAE  300
GHDLSNSVDL KDHWAKHGTN RYITIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165173KKAPKPPKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.21e-144BBR-BPC family protein