PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284711.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 766aa MW: 84585.7 Da PI: 4.7689

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.8e-10	614	657	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+++ el++ a++q+G++ +++I + ++ gR++ q+k+++ + XP_021284711.1 614 RAKWTKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 657 569***************88.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MDDFDIFSDK SPVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVITQS LSSLDNRLTS 60 PRGLSVDTST TSGTEESLKN NYEDLSQIAV TKADDVGFID APRSDVPLTV NDHDSHSVPN 120 IWAKDVDFDL DPFDDVANQV TNNGRAVGKF QPKTRPKDAD GVVDDCRSSQ GMTSSQVAVT 180 DSLLSEVAIS NGCHDSHSSF GRSVGENADI FSGLECLDQF LTQSSNNNGT IQIDDDRTGA 240 QEAGAFPDVE TQDIMSGATI ASGRHAGKFK PKTRLQTSVV PSQPAVVDIA MHPPNSPFIP 300 SETMCMENSI PDRSPMDLGA FIPPDPSTSE FPVNEELTNL TEASNPGVTL SGDVPSMPGK 360 LCSNSRKRKA SPIPNPSQKS KQSSASDGGN ENGKATKQLR KQVTSPKLVD DHEDGTCNDD 420 GPATEPPTSS AIDEDRDDGD DDDEYNAESA FSKRRTSRRS KKPMVENEKP PRKRKTTKKK 480 QVEKQKKVNE ASDQPTEEQP RKFSHSTRRK RRFVDESLLH TPEDEIDFAK VALKDIILLA 540 DYKERIAKKG AKASKIQLNN QSTKDTFPEE NAHNEESSIA SEQDQGFTDD QMSGGAQSSS 600 FFLNYQSYMD KEPRAKWTKQ DTELFYGAIR QFGPDFSLIQ QLFPGRSRHQ IKLKFKNEER 660 RYPLRLSEAL ASRTKDHSYF ERVIEHLHQV AGQAERESNG DVSIDLTREK AALTPETNGE 720 ATKAELDEDE AVGDQEADVA EDHSTFKSDE TDDDHEDILS SYRSAF

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MDDFDIFSDK SPVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVITQS LSSLDNRLTS  60
PRGLSVDTST TSGTEESLKN NYEDLSQIAV TKADDVGFID APRSDVPLTV NDHDSHSVPN  120
IWAKDVDFDL DPFDDVANQV TNNGRAVGKF QPKTRPKDAD GVVDDCRSSQ GMTSSQVAVT  180
DSLLSEVAIS NGCHDSHSSF GRSVGENADI FSGLECLDQF LTQSSNNNGT IQIDDDRTGA  240
QEAGAFPDVE TQDIMSGATI ASGRHAGKFK PKTRLQTSVV PSQPAVVDIA MHPPNSPFIP  300
SETMCMENSI PDRSPMDLGA FIPPDPSTSE FPVNEELTNL TEASNPGVTL SGDVPSMPGK  360
LCSNSRKRKA SPIPNPSQKS KQSSASDGGN ENGKATKQLR KQVTSPKLVD DHEDGTCNDD  420
GPATEPPTSS AIDEDRDDGD DDDEYNAESA FSKRRTSRRS KKPMVENEKP PRKRKTTKKK  480
QVEKQKKVNE ASDQPTEEQP RKFSHSTRRK RRFVDESLLH TPEDEIDFAK VALKDIILLA  540
DYKERIAKKG AKASKIQLNN QSTKDTFPEE NAHNEESSIA SEQDQGFTDD QMSGGAQSSS  600
FFLNYQSYMD KEPRAKWTKQ DTELFYGAIR QFGPDFSLIQ QLFPGRSRHQ IKLKFKNEER  660
RYPLRLSEAL ASRTKDHSYF ERVIEHLHQV AGQAERESNG DVSIDLTREK AALTPETNGE  720
ATKAELDEDE AVGDQEADVA EDHSTFKSDE TDDDHEDILS SYRSAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	453	475	KRRTSRRSKKPMVENEKPPRKRK
2	469	475	KPPRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-43	MYB_related family protein