PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284709.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Nin-like

Protein Properties

Length: 935aa MW: 103461 Da PI: 6.2497

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284709.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	617	668	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+++F++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_021284709.1 617 AEKTITLQVLHQHFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 668 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence
MEDAVFSPGA MLGGPSDSAM DFDYMDELFL DGCWLETAEG SEFLTLSPSS SNAFFDPAFM 60 WPTSESNTGD LGAGLSQIHN QGENQRSLLP GNSHMNGTQA ESLVSPQFSH MADVDRIHSP 120 HGYCITEGSE LSKRWWIGPR TSPGPATSVM QRLIQSLGYI KDFAKEKDVL VQLWVPVNRG 180 GRRVLTTSEQ PFSLDPNCQR LASYRNISVK YQFPAEEDSK DTAGLPGRVF LSKVPEWTPD 240 VRFFRSDEYP RLGHAQQHDV RGSFALPVFE QGSRTCLGVI EVVMTTEKIK IRPELESVCK 300 ALEAVNLRSS IASSAQNGKA CNKSYQAGLP EIKEVLRSAC ETHGLPLAQT WVSCIEQGKE 360 GCRHSTDNYV HCVSTVDDAC HIGDPNILGF HEACSEHHLL KGQGVAGGAF TTNQPCFSAD 420 ITSFKKTEYP LAHHAMMFNL HAAVAIRLRC IHTGNADFVL EFFLPTDCRD PEGQKKMLNS 480 LSIIIRQVCC SLRVVTDKEL EEETDLAVSE VIAPSDGIPS RDQLSKEQCT HCSLKCSSEN 540 SSWTASLTEV QQNTNAPLGL GKEKPRAMLD EELSKVKQHH EHVGLRESVE CGDSTFNEIS 600 FTSLAMGKTG EKRRTKAEKT ITLQVLHQHF AGSLKDAAKS IGVCPTTLKR ICRQHGIKRW 660 PSRKIKKVGH SLQKLQNVID SVQGASGAFH ISSFYSNFPE LASPKLSGTS TLTTTRLNDQ 720 PKQSSIQPEG DNFLPQAATS NSPSSSCSQS SSSSQCYSSE THQPSNIFGS EDLIIGKSSG 780 DCELKRVRSD VELHAVSQEG PKLFPRSQSL QSLNEQLISD SLHPISKNTS QIAQDFNAQR 840 IKVTYGEEKI RLRMQNKWRF KDLLQEITRR FNIDDISRFD LKYLDDDSEW VLLTCDEDLE 900 ECIDICQSSQ GNTIKLSLQV SHHNLDWSSG STGPL

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence

MEDAVFSPGA MLGGPSDSAM DFDYMDELFL DGCWLETAEG SEFLTLSPSS SNAFFDPAFM  60
WPTSESNTGD LGAGLSQIHN QGENQRSLLP GNSHMNGTQA ESLVSPQFSH MADVDRIHSP  120
HGYCITEGSE LSKRWWIGPR TSPGPATSVM QRLIQSLGYI KDFAKEKDVL VQLWVPVNRG  180
GRRVLTTSEQ PFSLDPNCQR LASYRNISVK YQFPAEEDSK DTAGLPGRVF LSKVPEWTPD  240
VRFFRSDEYP RLGHAQQHDV RGSFALPVFE QGSRTCLGVI EVVMTTEKIK IRPELESVCK  300
ALEAVNLRSS IASSAQNGKA CNKSYQAGLP EIKEVLRSAC ETHGLPLAQT WVSCIEQGKE  360
GCRHSTDNYV HCVSTVDDAC HIGDPNILGF HEACSEHHLL KGQGVAGGAF TTNQPCFSAD  420
ITSFKKTEYP LAHHAMMFNL HAAVAIRLRC IHTGNADFVL EFFLPTDCRD PEGQKKMLNS  480
LSIIIRQVCC SLRVVTDKEL EEETDLAVSE VIAPSDGIPS RDQLSKEQCT HCSLKCSSEN  540
SSWTASLTEV QQNTNAPLGL GKEKPRAMLD EELSKVKQHH EHVGLRESVE CGDSTFNEIS  600
FTSLAMGKTG EKRRTKAEKT ITLQVLHQHF AGSLKDAAKS IGVCPTTLKR ICRQHGIKRW  660
PSRKIKKVGH SLQKLQNVID SVQGASGAFH ISSFYSNFPE LASPKLSGTS TLTTTRLNDQ  720
PKQSSIQPEG DNFLPQAATS NSPSSSCSQS SSSSQCYSSE THQPSNIFGS EDLIIGKSSG  780
DCELKRVRSD VELHAVSQEG PKLFPRSQSL QSLNEQLISD SLHPISKNTS QIAQDFNAQR  840
IKVTYGEEKI RLRMQNKWRF KDLLQEITRR FNIDDISRFD LKYLDDDSEW VLLTCDEDLE  900
ECIDICQSSQ GNTIKLSLQV SHHNLDWSSG STGPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein