PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284211.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 674aa MW: 70893.1 Da PI: 5.7942

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	8.1e-08	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I r R++ q+ rw XP_021284211.1 205 RKPWSEAEDRELIAAVQKCGVGNWANILRGDFkGDRSASQLAQRW 249 789************************984223589999999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MIEKTKKQKK GSVSEEDIST LLQRYTATTV LALLQEVAQF PGVKLNWNAL VKKTSTGISN 60 AREYQMLWRH LAYRDVLLEK LEDGAEPMDD DSDLEYELEP CPSVSSEASA EAAACVKVLI 120 ASGLPSDSSL PNSSTVEAPL TINIPNGQSF RASSENSQPS CSMRGMNITV PVSVQKQILP 180 AVTSTETSLE GNGLSGANLP ARRKRKPWSE AEDRELIAAV QKCGVGNWAN ILRGDFKGDR 240 SASQLAQRWT IIKKRLGNLN VEGNSTSPQL SEAQLATRSA LSLALDMPDK NLTSACPSNP 300 GLKTTSSNSA LPSTSGEASV PAQSQFQQGN IASVQAQNPS QQGHVASVQA QNQSQQGPIT 360 SVSAHNQPQK GPITSVPAQN LSQQGPVASL QVSNQSQQGP MTTKTSPGSS GSTLKSLVGL 420 KKPPAKSFSS TGSILDATAV AAGARIGSPK AAASLLKAAQ SKNAIHIMTS SGSSVKPLMP 480 SGKEVHSNVQ YVCTGLTAEP LSCPVTSSTL NPGSVKSPIQ RVEHTPSASS SSLNVSIQQC 540 NTANSSPTVE GILKEELDAA GENKSFVSDS LPKELVKENG ACVSKNEQGE GVREDKPAVS 600 NLESEWKNLE AVAEHSSEKS MVEGNQLDAI TNLVEESQNA IDCSLIKKGD SQPEASVNDG 660 CTKNLEVLST DQAT

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MIEKTKKQKK GSVSEEDIST LLQRYTATTV LALLQEVAQF PGVKLNWNAL VKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGAEPMDD DSDLEYELEP CPSVSSEASA EAAACVKVLI  120
ASGLPSDSSL PNSSTVEAPL TINIPNGQSF RASSENSQPS CSMRGMNITV PVSVQKQILP  180
AVTSTETSLE GNGLSGANLP ARRKRKPWSE AEDRELIAAV QKCGVGNWAN ILRGDFKGDR  240
SASQLAQRWT IIKKRLGNLN VEGNSTSPQL SEAQLATRSA LSLALDMPDK NLTSACPSNP  300
GLKTTSSNSA LPSTSGEASV PAQSQFQQGN IASVQAQNPS QQGHVASVQA QNQSQQGPIT  360
SVSAHNQPQK GPITSVPAQN LSQQGPVASL QVSNQSQQGP MTTKTSPGSS GSTLKSLVGL  420
KKPPAKSFSS TGSILDATAV AAGARIGSPK AAASLLKAAQ SKNAIHIMTS SGSSVKPLMP  480
SGKEVHSNVQ YVCTGLTAEP LSCPVTSSTL NPGSVKSPIQ RVEHTPSASS SSLNVSIQQC  540
NTANSSPTVE GILKEELDAA GENKSFVSDS LPKELVKENG ACVSKNEQGE GVREDKPAVS  600
NLESEWKNLE AVAEHSSEKS MVEGNQLDAI TNLVEESQNA IDCSLIKKGD SQPEASVNDG  660
CTKNLEVLST DQAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-80	MYB_related family protein