PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283809.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TALE

Protein Properties

Length: 369aa MW: 42241.1 Da PI: 6.3298

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	296	331	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_021283809.1 296 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 331 4679*****************************885 PP
2	ELK	37.9	3.8e-13	251	272	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s XP_021283809.1 251 ELKNHLLRKYSGYLSSLKQELS 272 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEEYNQLNEN NTPRGNFLYA SPVLAPNSSP YGRASSGSNV SNQQAQMPLT SFHLQSSECY 60 QSEAHPIVKT EASTSQHGQK FHYPLLRGHQ AIHHQQEGNE SSSTEVEAIK AKIIAHPQYS 120 NLLEAYMDCQ KVGAPPEVAA RLAAARQEFE ARQRSSVTSR DNSKDPELDQ FMEAYYDMLV 180 KYREELTRPI QEALDFMRRI EAQLNMLSNG PVRIFNSDEK CEGVGSSEED QDNSGGETEL 240 PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLS WWELHYKWPY 300 PSETEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AALYMDGHYM 360 GDGPYRLGP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEEYNQLNEN NTPRGNFLYA SPVLAPNSSP YGRASSGSNV SNQQAQMPLT SFHLQSSECY  60
QSEAHPIVKT EASTSQHGQK FHYPLLRGHQ AIHHQQEGNE SSSTEVEAIK AKIIAHPQYS  120
NLLEAYMDCQ KVGAPPEVAA RLAAARQEFE ARQRSSVTSR DNSKDPELDQ FMEAYYDMLV  180
KYREELTRPI QEALDFMRRI EAQLNMLSNG PVRIFNSDEK CEGVGSSEED QDNSGGETEL  240
PEIDPRAEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKEARQKLLS WWELHYKWPY  300
PSETEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPQN AALYMDGHYM  360
GDGPYRLGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-139	TALE family protein