PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283779.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CAMTA

Protein Properties

Length: 754aa MW: 84579.4 Da PI: 5.1466

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	185.8	4.5e-58	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqr XP_021283779.1 20 LEAQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQR 114 5679***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le+el +iv+vhylevk XP_021283779.1 115 RSYWMLEQELMHIVFVHYLEVK 136 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML 120 EQELMHIVFV HYLEVKGSRT IGGIRETTDV SNSQTSSPST SSYSVSHTKA PSGNTDSASP 180 TSTLTSLCED ADSEDSHQAS SRFPTSPQIG NATMMDKMDP GFLNPYSSHP LPGRSSIPGA 240 NEVSHLHGDR PMGIDYGTCM TEAQKTLDLA SWEGGLEQYM PVYPVASSHA SMASAQPDTM 300 SISQQQVMKG KLLAVESADK EFGNLLPAQS NWQIPLADNA LELPKWPMDQ SSNFELAYDT 360 RLFEQKTDDF HLPNALEEFT NNDVLNEQPV LKNLQTQLIN ADTNSFMKSY PENDMHLEGN 420 INYAFSLKKS LLDGEESLKK VDSFSRWITK ELGEVDDLQM QSSSGIAWST VECGNVSDDA 480 SLSPSISQDQ LFSIVDFSPK WAYTDLETEV LIIGTFLKSQ EEVAKYSWSC MFGEVEVPAE 540 VIADGILFCH APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFAKGIHVS HIYGVASTEM 600 LLRFQMLLSL KSLSSLNHHL EGVGEKRDLM AKIILMKEEE ECHQIVDPSS DKDLPQREEK 660 DWLLQKLMKE KLYSWLLHKI VEDGKGPNIL DEKGQGVLHL AAALGYDWAV KPTVTAGVSI 720 NFRDVNGWTA LHWAAFCGRQ GPLYLILLIC VTPA

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML  120
EQELMHIVFV HYLEVKGSRT IGGIRETTDV SNSQTSSPST SSYSVSHTKA PSGNTDSASP  180
TSTLTSLCED ADSEDSHQAS SRFPTSPQIG NATMMDKMDP GFLNPYSSHP LPGRSSIPGA  240
NEVSHLHGDR PMGIDYGTCM TEAQKTLDLA SWEGGLEQYM PVYPVASSHA SMASAQPDTM  300
SISQQQVMKG KLLAVESADK EFGNLLPAQS NWQIPLADNA LELPKWPMDQ SSNFELAYDT  360
RLFEQKTDDF HLPNALEEFT NNDVLNEQPV LKNLQTQLIN ADTNSFMKSY PENDMHLEGN  420
INYAFSLKKS LLDGEESLKK VDSFSRWITK ELGEVDDLQM QSSSGIAWST VECGNVSDDA  480
SLSPSISQDQ LFSIVDFSPK WAYTDLETEV LIIGTFLKSQ EEVAKYSWSC MFGEVEVPAE  540
VIADGILFCH APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFAKGIHVS HIYGVASTEM  600
LLRFQMLLSL KSLSSLNHHL EGVGEKRDLM AKIILMKEEE ECHQIVDPSS DKDLPQREEK  660
DWLLQKLMKE KLYSWLLHKI VEDGKGPNIL DEKGQGVLHL AAALGYDWAV KPTVTAGVSI  720
NFRDVNGWTA LHWAAFCGRQ GPLYLILLIC VTPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein