PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281462.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 734aa MW: 79494.6 Da PI: 6.3457

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_021281462.1 308 PCPDFRK-GACRRGDMCEYAHG 328 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MCGGPEQSKS ESNPTSTREP TSNAKDMDHL TVKTEDSFSS LLELASNNDV EGIKQSIVQD 60 ASSVDEVGLW YSREKGSNQI VAKHRTPLMV AATYGSVDAV KLILTHSAAD VNLSCDTNKS 120 TALHCAASGG SLHAIDVVKL LLSAGADPNC TDAIGHRPVD VVVVHPKLQS MRAVLEELLS 180 GHVSDDSFRE HNLRISIDNS TSSSPTLSSS LENGSPPSPS NLASSPMASK FNDIPVNSAP 240 EKKEYPVDPS LPDIKNSIYA TDEFRMFSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR 300 KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT 360 AEELRPLYVS TGSAVPSPRS SASAANVMDM AAAMSLLPGS PSSVSGMSPS PFNQGMSPSA 420 NGLSHSSAAW PQPNVPTLHL PGSNLQSSRL RSSLSARDIP PGDFDMLRDF DAQQQILNDL 480 TCFSQSRNNS VSVSRSGWSK TLTPSNLEEL FSAEISSSPR YTDQTAASAV FSPTHKSAVL 540 NQFQQQQSIL SPISTNVFSP KNIEHPLLQA SFGVGSPGRM SPRSTEPISP MAARISAFVQ 600 REKQQQQLRS LSSRELGSNN PASIVGSPVN SSWSKWGSPN GKLDWSVNGD EMGELRRSSS 660 FELGNNGEEP DLSWVQSLVK ESPPEMMKEK LAVSVPGGAP PGEVLNNSNS QIDSVDHSVI 720 GAWLEQMQLD QLVV

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MCGGPEQSKS ESNPTSTREP TSNAKDMDHL TVKTEDSFSS LLELASNNDV EGIKQSIVQD  60
ASSVDEVGLW YSREKGSNQI VAKHRTPLMV AATYGSVDAV KLILTHSAAD VNLSCDTNKS  120
TALHCAASGG SLHAIDVVKL LLSAGADPNC TDAIGHRPVD VVVVHPKLQS MRAVLEELLS  180
GHVSDDSFRE HNLRISIDNS TSSSPTLSSS LENGSPPSPS NLASSPMASK FNDIPVNSAP  240
EKKEYPVDPS LPDIKNSIYA TDEFRMFSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT  360
AEELRPLYVS TGSAVPSPRS SASAANVMDM AAAMSLLPGS PSSVSGMSPS PFNQGMSPSA  420
NGLSHSSAAW PQPNVPTLHL PGSNLQSSRL RSSLSARDIP PGDFDMLRDF DAQQQILNDL  480
TCFSQSRNNS VSVSRSGWSK TLTPSNLEEL FSAEISSSPR YTDQTAASAV FSPTHKSAVL  540
NQFQQQQSIL SPISTNVFSP KNIEHPLLQA SFGVGSPGRM SPRSTEPISP MAARISAFVQ  600
REKQQQQLRS LSSRELGSNN PASIVGSPVN SSWSKWGSPN GKLDWSVNGD EMGELRRSSS  660
FELGNNGEEP DLSWVQSLVK ESPPEMMKEK LAVSVPGGAP PGEVLNNSNS QIDSVDHSVI  720
GAWLEQMQLD QLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein