PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281146.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 423aa    MW: 48539.5 Da    PI: 7.2147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.51.1e-32110214199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_021281146.1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGDsGK 204
                     89****************************66677899*************************************************66588899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_021281146.1 205 DRLFIDWRRR 214
                     9999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MNFVLEEKGY CNNEEEDDEE VIRETSNFPF SSSSSSASSK YKDTAPQQHQ NLWLRNLDSQ  60
ADYKSQESAI NFDRKLELMD LSLGNNNEES NIGSCRGGDS SRSTEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLDS SSNEKGLLLN FEDRNGKSWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFQRGVG DSGKDRLFID WRRRPTAPDP TSLAHIQLQN QFNFPQSVRW  240
GRLYSLPPQP MCMPRNYEPL HRLNYSIYPY NHHYHHHQQQ QLQLQQQQQQ QQHHQAITYG  300
NVAQYHLRSS SGSHHHHQYH QIGAVQEGGG EPMVIDSVPV VQGNKTAAKR LRLFGVNMEC  360
PTQDESSSTF PHGTNTIGSD DSPHFSFSSL QSRLSNNNNT PLSRMEAEYS KKGKSSLSID  420
LDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-79B3 family protein