PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280116.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 448aa MW: 48254.5 Da PI: 6.4331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.3e-05	296	319	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 +++s++ +Ka++L +++eY+k+Lq XP_021280116.1 296 HNQSERTDKASMLDEVIEYLKQLQ 319 46899******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MSQCVPRWDL DDNPATARHS LRSNSNSTAP DVPMLDCEVA ELTWENGQLA MHSLGPPRLP 60 AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRKVSL DRGEDELVPW FDHHRAAVAA 120 AAAASSSATM TMDALVPCSN RSEDRTTHVM ESIPGLGGTC VVGCSTRVGS CSGPTGTQDD 180 GVPLTRKRAR EACVPAAPEW SSKDQNPSAS ATFGRDSQHV TVDSYEKDLG VGFTSTSLGS 240 PENTSSARPC TKATTADDHD SVCHSRPPRE AGEEDKRKEA GKSSVSTKRS RAAAIHNQSE 300 RTDKASMLDE VIEYLKQLQA QVHMMSRMNI PPMMFPMTMQ QQLQMSMMAP MGMGMGMGMG 360 MGMVVMDMNT MGRPNVTGIS PVLPNPFVTM TPWDGSGDRL QAASAAVMPD PLSAFLACQS 420 QPITMDAYSR MAAMYQQMQH PPASSSKN

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MSQCVPRWDL DDNPATARHS LRSNSNSTAP DVPMLDCEVA ELTWENGQLA MHSLGPPRLP  60
AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRKVSL DRGEDELVPW FDHHRAAVAA  120
AAAASSSATM TMDALVPCSN RSEDRTTHVM ESIPGLGGTC VVGCSTRVGS CSGPTGTQDD  180
GVPLTRKRAR EACVPAAPEW SSKDQNPSAS ATFGRDSQHV TVDSYEKDLG VGFTSTSLGS  240
PENTSSARPC TKATTADDHD SVCHSRPPRE AGEEDKRKEA GKSSVSTKRS RAAAIHNQSE  300
RTDKASMLDE VIEYLKQLQA QVHMMSRMNI PPMMFPMTMQ QQLQMSMMAP MGMGMGMGMG  360
MGMVVMDMNT MGRPNVTGIS PVLPNPFVTM TPWDGSGDRL QAASAAVMPD PLSAFLACQS  420
QPITMDAYSR MAAMYQQMQH PPASSSKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	8e-97	bHLH family protein