PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280115.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 470aa MW: 50905.6 Da PI: 7.7315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.2e-15	296	341	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_021280115.1 296 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 341 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MSQCVPRWDL DDNPATARHS LRSNSNSTAP DVPMLDCEVA ELTWENGQLA MHSLGPPRLP 60 AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRKVSL DRGEDELVPW FDHHRAAVAA 120 AAAASSSATM TMDALVPCSN RSEDRTTHVM ESIPGLGGTC VVGCSTRVGS CSGPTGTQDD 180 GVPLTRKRAR EACVPAAPEW SSKDQNPSAS ATFGRDSQHV TVDSYEKDLG VGFTSTSLGS 240 PENTSSARPC TKATTADDHD SVCHSRPPRE AGEEDKRKEA GKSSVSTKRS RAAAIHNQSE 300 RKRRDKINQR MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVHMMSRM NIPPMMFPMT 360 MQQQLQMSMM APMGMGMGMG MGMGMVVMDM NTMGRPNVTG ISPVLPNPFV TMTPWDGSGD 420 RLQAASAAVM PDPLSAFLAC QSQPITMDAY SRMAAMYQQM QHPPASSSKN

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MSQCVPRWDL DDNPATARHS LRSNSNSTAP DVPMLDCEVA ELTWENGQLA MHSLGPPRLP  60
AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRKVSL DRGEDELVPW FDHHRAAVAA  120
AAAASSSATM TMDALVPCSN RSEDRTTHVM ESIPGLGGTC VVGCSTRVGS CSGPTGTQDD  180
GVPLTRKRAR EACVPAAPEW SSKDQNPSAS ATFGRDSQHV TVDSYEKDLG VGFTSTSLGS  240
PENTSSARPC TKATTADDHD SVCHSRPPRE AGEEDKRKEA GKSSVSTKRS RAAAIHNQSE  300
RKRRDKINQR MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVHMMSRM NIPPMMFPMT  360
MQQQLQMSMM APMGMGMGMG MGMGMVVMDM NTMGRPNVTG ISPVLPNPFV TMTPWDGSGD  420
RLQAASAAVM PDPLSAFLAC QSQPITMDAY SRMAAMYQQM QHPPASSSKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	305	ERKRRD
2	301	306	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-118	bHLH family protein