PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279887.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 268aa MW: 30630.2 Da PI: 5.4282

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++k++G g+W++ ++ g+ R++k+c++rw +yl XP_021279887.1 14 KGPWTPEEDQILINYIKLYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.8	1.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l XP_021279887.1 67 RGNFTREEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MVRAPCCEKM GLKKGPWTPE EDQILINYIK LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TREEEDTIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQSH 120 GSNDNKRQGI DSSKDIKKEQ EPVNFLSPVT DSPGCRPVSS PESSSEVSTV TTSENNSNMC 180 MKFEKHEDFS EIDENFWSEV LSADNSSMAS DFQVVGSDLQ PQYFPSSPLA TFEPVNDYGS 240 NLYDSDTNMD FWYNLFTRAG DLPEQPEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-81	MYB family protein