PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279758.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 253aa    MW: 29383.3 Da    PI: 9.1816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-18128217198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  +  ++ ++tl de+g+++  k+  +k++    l++GW++F  +++L +gD +vF+l+  +ef  +v 
  XP_021279758.1 128 FVKPMLQSHVTGGFWLGLPVQFCKKHLPD--QDEMITLVDEKGEEFPTKYLAEKTG----LSGGWRGFSLDHNLVDGDALVFQLVTPTEF--KVY 214
                     89************************533..5569***************555555....***********************9876666..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_021279758.1 215 IIR 217
                     887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MVAAKSTYEQ MRKRRLEENK KRMEELNLKN LSQALKNTSP KPSPMKQMKP RTPRQRVDLT  60
AVRRSSRVAD KPKPNYKDIP LEPLERPRRG HSRRNLWDRV YASDEERAYA IERAEHLQST  120
LESDYPSFVK PMLQSHVTGG FWLGLPVQFC KKHLPDQDEM ITLVDEKGEE FPTKYLAEKT  180
GLSGGWRGFS LDHNLVDGDA LVFQLVTPTE FKVYIIRAYE SEDNEDGEPG EEDDKEPDVQ  240
VLDRSAKRIR ARK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-81B3 family protein