PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279559.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 738aa MW: 79871.6 Da PI: 6.4741

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_021279559.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAHAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTGA ATTAQVGAKD 120 GKSETPLCSL RCKQVLDLEK EPLPERPNGD EKPISLKDIQ DDSCSEVFTL LHEANCSSVS 180 SVNKNSIPTS AALRNSCTFR EFVPSLKETI QDNGTSKASN LDNSCTSHEK SAQAQKKDDV 240 DGGLHADEMQ ATQNYPRHVA VHVLDGSLGT CAQNPSLDMP FQDSVFHPTG DVHGQPNLFA 300 NPAASATTEH QNNAPRSTHQ AFPTFHPPFT HVCPNPEDYR SFLHVSSTFS SLIASTLLQN 360 PAAHAAASFA ATFWPYANVE NSADSPACSQ GGFPSRQMNP APSMAAIAAA TVAAATAWWA 420 AHGLLPLCAP LHTGFTCALA STAAVPPMDN GQAPAARTER KDNNDQDLSM QDQQLDPECS 480 EALQGQHSTS KSPTSSSSDS EACGDAKVNS GVKXADDEKA AALTEPQDAN KTNRKQVDRS 540 SCGSNTPSSS EVETDALEKH EKDKEDAKGA DXNHPQVDCC NRRGRSSSNL SDSWKEVSQG 600 GRLAFQALFS REVLPQSFSP PHDGKNKGQQ KDNVEDDKQN SDEKDGATSA LDLNSQTVGS 660 CSDRQGVEKN GLSRGGDIVE EGLRTIGLEN AKLKARRTGF KPYKRCSVEA KENRVMNAGS 720 QGEEKGPKRI RLEGGAST

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MDTYSSGEEL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEAHAKG VPIGQALDIE IPPPRPKRKP SNPYPRKTGA ATTAQVGAKD  120
GKSETPLCSL RCKQVLDLEK EPLPERPNGD EKPISLKDIQ DDSCSEVFTL LHEANCSSVS  180
SVNKNSIPTS AALRNSCTFR EFVPSLKETI QDNGTSKASN LDNSCTSHEK SAQAQKKDDV  240
DGGLHADEMQ ATQNYPRHVA VHVLDGSLGT CAQNPSLDMP FQDSVFHPTG DVHGQPNLFA  300
NPAASATTEH QNNAPRSTHQ AFPTFHPPFT HVCPNPEDYR SFLHVSSTFS SLIASTLLQN  360
PAAHAAASFA ATFWPYANVE NSADSPACSQ GGFPSRQMNP APSMAAIAAA TVAAATAWWA  420
AHGLLPLCAP LHTGFTCALA STAAVPPMDN GQAPAARTER KDNNDQDLSM QDQQLDPECS  480
EALQGQHSTS KSPTSSSSDS EACGDAKVNS GVKXADDEKA AALTEPQDAN KTNRKQVDRS  540
SCGSNTPSSS EVETDALEKH EKDKEDAKGA DXNHPQVDCC NRRGRSSSNL SDSWKEVSQG  600
GRLAFQALFS REVLPQSFSP PHDGKNKGQQ KDNVEDDKQN SDEKDGATSA LDLNSQTVGS  660
CSDRQGVEKN GLSRGGDIVE EGLRTIGLEN AKLKARRTGF KPYKRCSVEA KENRVMNAGS  720
QGEEKGPKRI RLEGGAST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	1e-140	MYB_related family protein