PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279540.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 690aa MW: 77087 Da PI: 4.9282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	477	523	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_021279540.1 477 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 523 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS 60 AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSARIQTVL CIPLLDGVVE LGSTEKVQED 180 LGMVQHVKTF FTDIHNQNPP PPKPALSEHS TSNPATSSDH TRFRSPSIPP MYAAADPPVN 240 ANQEDDDDED EEEEEEDDDE EAPESDSAET GRNSQQVPAQ DTQAVAAAAE PSELMQLEMS 300 EDIRLGSPDD ASNNLDSDFH MLAVSQTGNP EDQQRRAESF RAESSRRWAM LQEPTGSSLQ 360 PPCSGPPPLD ELSQEDTHYS QTVSTILQNQ PARWADSSST GYATYSTHSA FAKWTTRSDL 420 HLHVAVEGTS QWLLKYILFS VPFLHSKYRD ENSPKSRDAD AGARFRKGTP QDELSANHVL 480 AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRKKIQELE TRNRQMEADK 540 QRSRSADSLQ RTSSLKDQRS GVTVSERARS LGPGTGSDKR KMRIVEGSGG GQKPRTVELP 600 QAMEETSVEV SIIESDALLE LRCAYKEGLL LDIMQMLREQ LRIEITAVQS SLNNGVFEAE 660 LRAKVKDNVN GKKVSIMEVK RAINQIIPQF

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSARIQTVL CIPLLDGVVE LGSTEKVQED  180
LGMVQHVKTF FTDIHNQNPP PPKPALSEHS TSNPATSSDH TRFRSPSIPP MYAAADPPVN  240
ANQEDDDDED EEEEEEDDDE EAPESDSAET GRNSQQVPAQ DTQAVAAAAE PSELMQLEMS  300
EDIRLGSPDD ASNNLDSDFH MLAVSQTGNP EDQQRRAESF RAESSRRWAM LQEPTGSSLQ  360
PPCSGPPPLD ELSQEDTHYS QTVSTILQNQ PARWADSSST GYATYSTHSA FAKWTTRSDL  420
HLHVAVEGTS QWLLKYILFS VPFLHSKYRD ENSPKSRDAD AGARFRKGTP QDELSANHVL  480
AERRRREKLN ERFIILRSLV PFVTKMDKAS ILGDTIEYVK QLRKKIQELE TRNRQMEADK  540
QRSRSADSLQ RTSSLKDQRS GVTVSERARS LGPGTGSDKR KMRIVEGSGG GQKPRTVELP  600
QAMEETSVEV SIIESDALLE LRCAYKEGLL LDIMQMLREQ LRIEITAVQS SLNNGVFEAE  660
LRAKVKDNVN GKKVSIMEVK RAINQIIPQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	487	ERRRRE
2	483	488	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-105	bHLH family protein