PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279192.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 575aa MW: 64461.3 Da PI: 9.8441

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.5e-17	236	282	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +l+++vkq+G + W+ Ia+ + gR +kqc++rw+++l XP_021279192.1 236 KGQWTDDEDRKLIRLVKQYGVRKWAQIAENLV-GRAGKQCRERWHNHL 282 799***************************.***********97 PP
2	Myb_DNA-binding	52.7	9.7e-17	288	330	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+ XP_021279192.1 288 KDSWSEEEERVLVEAHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 330 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MGTKIIYRVL IEEKDIYRIL IEKKNYKIIC EKVNITKGVV EELQPQGILN RWIDHQLING 60 NFAMWLLPRL AMKERKKKRK KEKNSYLIFX PVLILLRYLF MEGVGGRGGG GGFGYGNLLS 120 RSSVYKPSPP LSAIDRFLWG HNHSKISKGT VGSTDGSLRG FSFSSDAIGG YXAGVSWQSN 180 LEESFVDGLV IDGGSLALTG DKNPNMETKE VKISMKSFPK GVGKRNKKVA SAALIKGQWT 240 DDEDRKLIRL VKQYGVRKWA QIAENLVGRA GKQCRERWHN HLRPDIKKDS WSEEEERVLV 300 EAHAKVGNRW AEIAKFIPGR TENAIKNHWN ATKRRQNSRK RNKQNDNQNG KPQSSILQDY 360 IKSQNLNSNN RSTTSITPSN SSTTSTTPSS STFSEDLSGQ SKYFLPDQPS KSNDSHPLIT 420 QTYDEELLFM QNFFANNNNI QPCIDYSQTK GATEVKSVVV DNLSKGPSTI DCSGFICQVN 480 GVQQCNPADP FGFSSSITNP NLLTTGLQEQ EPRTTYLFSD LYLSRLLNGS ATTSSFSADY 540 GCTNMTTDLQ AEQASSHGRK EMDLIEMVSS SQFFR

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MGTKIIYRVL IEEKDIYRIL IEKKNYKIIC EKVNITKGVV EELQPQGILN RWIDHQLING  60
NFAMWLLPRL AMKERKKKRK KEKNSYLIFX PVLILLRYLF MEGVGGRGGG GGFGYGNLLS  120
RSSVYKPSPP LSAIDRFLWG HNHSKISKGT VGSTDGSLRG FSFSSDAIGG YXAGVSWQSN  180
LEESFVDGLV IDGGSLALTG DKNPNMETKE VKISMKSFPK GVGKRNKKVA SAALIKGQWT  240
DDEDRKLIRL VKQYGVRKWA QIAENLVGRA GKQCRERWHN HLRPDIKKDS WSEEEERVLV  300
EAHAKVGNRW AEIAKFIPGR TENAIKNHWN ATKRRQNSRK RNKQNDNQNG KPQSSILQDY  360
IKSQNLNSNN RSTTSITPSN SSTTSTTPSS STFSEDLSGQ SKYFLPDQPS KSNDSHPLIT  420
QTYDEELLFM QNFFANNNNI QPCIDYSQTK GATEVKSVVV DNLSKGPSTI DCSGFICQVN  480
GVQQCNPADP FGFSSSITNP NLLTTGLQEQ EPRTTYLFSD LYLSRLLNGS ATTSSFSADY  540
GCTNMTTDLQ AEQASSHGRK EMDLIEMVSS SQFFR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	RKKKRKK
2	75	82	RKKKRKKE
3	75	83	RKKKRKKEK
4	77	81	KKRKK
5	105	112	GGRGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-74	MYB family protein