PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278923.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 753aa MW: 87284.9 Da PI: 7.5277

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.1e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++ ++HnHel p XP_021278923.1 29 YYKEYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFIKDHNHELLP 114 8*************************************999877....9**********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MDSSISTSDT ILEPHSDLEF ESHEAAYTYY KEYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKDHNH ELLPAQAHFF 120 RSHRNVDPLK NDVGRRRKNL AAVSKLFGAY QNIEFLEGYM RNQHDKGRSL VLEEGDAQVL 180 LELFMNMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF TNFGDVVSFD TTYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPRVML TDQNNAIKAA 300 VAAVFRNTRH CFCLWHVLEK LPRHLEYLSL WHESLMLKFD KCIYRSWTEE QFEKRWWKMV 360 EKFHLREMQW VQSLYEDRRQ WVPAFMRDIS FAGLSTALRS DSLSSSFDRY VHGETSLRAF 420 LEQYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQMS IVYTHEVFKK FQDEVLGAAA 480 CHLKKENEDQ VSMTYSVKDF EDNQNYMVEW NESKSDIYCS CRSFEYKGYL CRHAIVVLQM 540 SGIFSIPSKY ILQRWTNAAL SRRPISQKLD EVQSKVRRYS DLCRRAIILS EEGSLSQESY 600 NLALAAIKGA RKQCASVNNS VENDARPNTS VIYAVSGVEG QNQCVNAPEE KAPDPRMANT 660 IKTSRSVEAV LERPINENNP SRNGKQVSLV GAANVGSQDG FHQMELSDIR PTSMHNVMPT 720 QLHNMVPTML TNVASTHFHN VAATHLHDNR LQR

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MDSSISTSDT ILEPHSDLEF ESHEAAYTYY KEYAKSVGFG TAKLSSRRSR VSKEFIDAKF  60
TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKDHNH ELLPAQAHFF  120
RSHRNVDPLK NDVGRRRKNL AAVSKLFGAY QNIEFLEGYM RNQHDKGRSL VLEEGDAQVL  180
LELFMNMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF TNFGDVVSFD TTYFTNKYKI  240
PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPRVML TDQNNAIKAA  300
VAAVFRNTRH CFCLWHVLEK LPRHLEYLSL WHESLMLKFD KCIYRSWTEE QFEKRWWKMV  360
EKFHLREMQW VQSLYEDRRQ WVPAFMRDIS FAGLSTALRS DSLSSSFDRY VHGETSLRAF  420
LEQYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQMS IVYTHEVFKK FQDEVLGAAA  480
CHLKKENEDQ VSMTYSVKDF EDNQNYMVEW NESKSDIYCS CRSFEYKGYL CRHAIVVLQM  540
SGIFSIPSKY ILQRWTNAAL SRRPISQKLD EVQSKVRRYS DLCRRAIILS EEGSLSQESY  600
NLALAAIKGA RKQCASVNNS VENDARPNTS VIYAVSGVEG QNQCVNAPEE KAPDPRMANT  660
IKTSRSVEAV LERPINENNP SRNGKQVSLV GAANVGSQDG FHQMELSDIR PTSMHNVMPT  720
QLHNMVPTML TNVASTHFHN VAATHLHDNR LQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1 family protein