PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278095.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 428aa MW: 47724 Da PI: 7.8714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278095.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	362	407	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq XP_021278095.1 362 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 407 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MESDLQHHHH HLLDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE 60 TERIIERFLS SSGDGGGGNT VNISDQNLCE ITQNSPVRET VIKIEEPTQI MTPINNQTGV 120 MQQQQQPQQG NYSSASQNFY QSQPQQHLRN QQSGSTMDYR IPNSVGMARP TQMKMGGGNN 180 SNLIRHSSSP AGLFSNLNID NSYGVMRGMG DYGGVNSSNR EASFPSASRP PPSGLMSPIA 240 EMGNKNMGPK CSENAGFGEN RHNNYSSGFP VTSWDDSMMI SDNMPGVKRL REDDRSLSGL 300 DLDGAETQNT DAGNRPPPIL AHHLSLPKSS AEMSAIDKFL QYQDSVPCKI RAKRGCATHP 360 RSIAERVRRT KISERMRKLQ DLVPNMDKQT NTADMLDLAV DYIKDLQKQV KTLSDNRAKC 420 SCSNKQQQ

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MESDLQHHHH HLLDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE  60
TERIIERFLS SSGDGGGGNT VNISDQNLCE ITQNSPVRET VIKIEEPTQI MTPINNQTGV  120
MQQQQQPQQG NYSSASQNFY QSQPQQHLRN QQSGSTMDYR IPNSVGMARP TQMKMGGGNN  180
SNLIRHSSSP AGLFSNLNID NSYGVMRGMG DYGGVNSSNR EASFPSASRP PPSGLMSPIA  240
EMGNKNMGPK CSENAGFGEN RHNNYSSGFP VTSWDDSMMI SDNMPGVKRL REDDRSLSGL  300
DLDGAETQNT DAGNRPPPIL AHHLSLPKSS AEMSAIDKFL QYQDSVPCKI RAKRGCATHP  360
RSIAERVRRT KISERMRKLQ DLVPNMDKQT NTADMLDLAV DYIKDLQKQV KTLSDNRAKC  420
SCSNKQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	8e-77	bHLH family protein