PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278025.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 719aa MW: 82382.7 Da PI: 8.4883

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	511	551	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e + + v+++G++ Wk+ a t+g + + ++k+ w+ XP_021278025.1 511 PWTPEEYEFIQKFVEKHGPR-WKLLADTLG--KHRHHVKDTWRR 551 8***************99.******9..788999998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MGKKMREKDG HKRENNQVEQ GNVVNKESDF LDVSAGNMND VSRLINRDHD KNKRKEDNYE 60 KKKDRMKKRK SEFDKDKKES QKAPKKHKKS KDGVGDVKEA LMEICTAGKE NIKNESSKAM 120 YLGNNFELEA KRVRKDKHKN KIGDGIDAVT IATETLEHRK MQETVEVLKG CSTEDINKMV 180 HGKEGEYEKR KKKKHNLEKV TGNVDGHIAV MSSVTDGNET DKKKDREDGN AIKMVEDSGK 240 GKKRKKKSIN YGLGVDKPRK MSTGIENHEF LYSNGELNCN AAECGKLGIA VDNDEDGNRD 300 KKKKKKKSKS LKTGSDGKEH QSFKGYKDRE VDSNDKEDPA DNEVECTELG RGVDNTENGN 360 RGRKKKSKSV KSDIEGKHHE GDARTRKSVN TTNQSEDATP KDISKKVSFS DHVEVFPCVD 420 GIVDANMDGK EGLVYGKHYS KEEDAIVMDA VANYIESNNL GEEGLDMVLN CRTYPKVRNC 480 WKEIQAAIPW RPCDSVYRRA HVLFERDEKH PWTPEEYEFI QKFVEKHGPR WKLLADTLGK 540 HRHHVKDTWR RIKLTNTNRG NWSQEEYQNL FDLVNLDLSM KAFEEKKSKH GMLRDNICWS 600 AISDKMETRG FALCCKKWYY SLASPMVAEG IWADADDYRM LDALSSLDAC CMEDVDWENL 660 IEHRSGDLCR KRWNQMVQHV GPHGVKSFAE QVEVLANRYR PDMLDAREAY DSKCPVDLP

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MGKKMREKDG HKRENNQVEQ GNVVNKESDF LDVSAGNMND VSRLINRDHD KNKRKEDNYE  60
KKKDRMKKRK SEFDKDKKES QKAPKKHKKS KDGVGDVKEA LMEICTAGKE NIKNESSKAM  120
YLGNNFELEA KRVRKDKHKN KIGDGIDAVT IATETLEHRK MQETVEVLKG CSTEDINKMV  180
HGKEGEYEKR KKKKHNLEKV TGNVDGHIAV MSSVTDGNET DKKKDREDGN AIKMVEDSGK  240
GKKRKKKSIN YGLGVDKPRK MSTGIENHEF LYSNGELNCN AAECGKLGIA VDNDEDGNRD  300
KKKKKKKSKS LKTGSDGKEH QSFKGYKDRE VDSNDKEDPA DNEVECTELG RGVDNTENGN  360
RGRKKKSKSV KSDIEGKHHE GDARTRKSVN TTNQSEDATP KDISKKVSFS DHVEVFPCVD  420
GIVDANMDGK EGLVYGKHYS KEEDAIVMDA VANYIESNNL GEEGLDMVLN CRTYPKVRNC  480
WKEIQAAIPW RPCDSVYRRA HVLFERDEKH PWTPEEYEFI QKFVEKHGPR WKLLADTLGK  540
HRHHVKDTWR RIKLTNTNRG NWSQEEYQNL FDLVNLDLSM KAFEEKKSKH GMLRDNICWS  600
AISDKMETRG FALCCKKWYY SLASPMVAEG IWADADDYRM LDALSSLDAC CMEDVDWENL  660
IEHRSGDLCR KRWNQMVQHV GPHGVKSFAE QVEVLANRYR PDMLDAREAY DSKCPVDLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	70	KRKEDNYEKKKDRMKKRK
2	67	89	KKRKSEFDKDKKESQKAPKKHKK
3	242	246	KKRKK
4	301	307	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-123	MYB_related family protein