PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277705.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CPP

Protein Properties

Length: 609aa MW: 64830.9 Da PI: 7.9124

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.4	3.2e-14	123	162	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C N+ e+ XP_021277705.1 123 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 162 89************************.******9875 PP
2	TCR	50.9	3.2e-16	207	246	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_021277705.1 207 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 246 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MGEGEGGDFP PKKVQSDTAD FPAKKLARQL DFTAGFGGVS SGGVVLPEHP QSTQGIAAAA 60 AAAVTQQHQQ QQQQQIKPPV VATTPVAATQ PPPLTTASSR VVKPESPKAK PRPNELKDGT 120 PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCVNCYNNV ENEAARRDAV EATLERNPNA 180 FRPKIASSPH GARDSREEAG EGLMLGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM 240 DCKNFEGSEE RQALFHGDHA NNMAYIQQAA NAAITGAIGS SGYAPLPVSK KRKGQEPFFG 300 STAKDPSVHR LGQFPQANHI RASAPSSSLS SMPVSRAGAT AAVGPSKFTY RSLLADIIQK 360 QDLRELCSVL IVLSGEAAKT LADQRSLTEK RAEDQTETSL ASSTQDRLQS QKDSDAEKAM 420 ADDCSSANQA DKAGPEDSSS DGADMPKGRP MSPGTLALMC DEQDTMFMAA ASPNGIMGHG 480 CCTSSQLPYG QGMTEIYAEQ ERIVLTKFRD CLNRLITFGE IKETQCSSLA RTEIGSQRGP 540 LSNGTEIVRT EAGNRQGSIT NGVAKTVSPL TVKTSQMAAA VVTTAGNDLP RVPSVPENGD 600 AKTKAEKPM

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MGEGEGGDFP PKKVQSDTAD FPAKKLARQL DFTAGFGGVS SGGVVLPEHP QSTQGIAAAA  60
AAAVTQQHQQ QQQQQIKPPV VATTPVAATQ PPPLTTASSR VVKPESPKAK PRPNELKDGT  120
PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCVNCYNNV ENEAARRDAV EATLERNPNA  180
FRPKIASSPH GARDSREEAG EGLMLGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM  240
DCKNFEGSEE RQALFHGDHA NNMAYIQQAA NAAITGAIGS SGYAPLPVSK KRKGQEPFFG  300
STAKDPSVHR LGQFPQANHI RASAPSSSLS SMPVSRAGAT AAVGPSKFTY RSLLADIIQK  360
QDLRELCSVL IVLSGEAAKT LADQRSLTEK RAEDQTETSL ASSTQDRLQS QKDSDAEKAM  420
ADDCSSANQA DKAGPEDSSS DGADMPKGRP MSPGTLALMC DEQDTMFMAA ASPNGIMGHG  480
CCTSSQLPYG QGMTEIYAEQ ERIVLTKFRD CLNRLITFGE IKETQCSSLA RTEIGSQRGP  540
LSNGTEIVRT EAGNRQGSIT NGVAKTVSPL TVKTSQMAAA VVTTAGNDLP RVPSVPENGD  600
AKTKAEKPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	CPP family protein